BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897654
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48120.1 | Symbols: | unknown protein; Has 22990 Blast hits... 1164 0.0
> AT3G48120.1 | Symbols: | unknown protein; Has 22990 Blast hits
to 12942 proteins in 666 species: Archae - 8; Bacteria -
739; Metazoa - 13803; Fungi - 2465; Plants - 1363; Viruses -
116; Other Eukaryotes - 4496 (source: NCBI BLink). | chr3:17772057-17774739
FORWARD LENGTH=1256
Length=1256
Score = 1164 bits (630), Expect = 0.0
Identities = 886/1001 (89%), Gaps = 52/1001 (5%)
Strand=Plus/Plus
Query 1 ATGGAGGAGGAAAAAGCGGCAGCTTACTACGACGAGCTCACGCGTAAAGGAGGAGGAGCT 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 81 ATGGAGGAAGAAAAAGCGGCAGCTTACTACGACGAGCTCACGCGTAAAGGAGAAGGAGCT 140
Query 61 GCTCGTTTCAAGCAAGGCCTCGGCTTCTCCACCGGAGCCAACGCCGTTCCGGATAGAGGA 120
||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 141 GCTCGCTTCAAGCAAGGTCTCGGCTTCTCCACCGGAGCCAACGCTGTTCCGGAGAGAGGA 200
Query 121 TCGGCGATTGCATCGTCGTCTTCGTTTCTCAACCAGTTCGTCAAGG--------C-TACT 171
|||||||| |||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 201 TCGGCGATCGCATCGTCGTCTTCGTTTCTCAACCAATTCGTCAAGGCTTCTAACCATACT 260
Query 172 AAATCCACTGATAACAAGGATTCCGAGATCCGATCCATCAGAGATAAATTGAAGAAGAAT 231
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 261 AAATCCACTGATAACAAGGATTCCGAGATCCGGTCCATCAGAGATAAATTGAAGAAG--- 317
Query 232 AAACCTGAAGATCAGCAACATCATAGGGCT-CCGGAGAGTAGGTACAGAGAATCGAGTGA 290
|||||||||||| | | ||||| | |||||||| || || ||||| ||||||||
Sbjct 318 AAACCTGAAGAT------C--C-TAGGG-TGCCGGAGAGGAGCTATAGAGAGTCGAGTGA 367
Query 291 ACGGCGTCGTTACCggagtagagagagggatgagagagataaaagccatagaagcaggag 350
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 368 ACGGCGTCGTTATCGGAGTAGAGAGAGGGATGAGAGAGATAAAAGCCATAGAAGGAGAAG 427
Query 351 caggagtacagagagaCGTAGTAGGTATGGGGATAGAGAGAGACGGAGAAGCAGGAGTAG 410
||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 428 CAGGAGTTCAGAGAGACGTAGTAGTTATGTGGATAGAGAGAGACGGAGAAGCAGGAGCAG 487
Query 411 GAGTGCAGAGAGGCGTAATAGGTATGGGGATAGAGAGAGTC---GGAGGAG----C-AA- 461
|||||||||||||||||||||||| |||||||||||||| | ||||||| | ||
Sbjct 488 GAGTGCAGAGAGGCGTAATAGGTACGGGGATAGAGAGAGCCGGAGGAGGAGTAACCGAAG 547
Query 462 TAG-A--TCGTCG-C----------C-GA-G-G-AGAGAAGATGTTAAGGAGAAGAAGAT 503
|| | | |||| | | || | | ||||||||||||||||||||||||
Sbjct 548 CAGAAGTTTGTCGCCGAGGAGAGAGCGGAGGAGCAGAGAAGATGTTAAGGAGAAGAAGCC 607
Query 504 TGATTACTCGCGGTTAATCAAAGGCTACGATGAGATGTCAGCTGCTGAAAAAGTGAAGGG 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 608 TGATTACTCGCGGTTAATCAAAGGCTACGATGAGATGTCAGCTGCTGAAAAAGTGAAAGC 667
Query 564 CAAAATGAAGCTCCAGCTTGATGAAACTGCTGAGAAAGATACCAGTAAGGGTGCAGGATG 623
||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 668 CAAGATGAAGCTTCAGCTTGATGAAACGGCTGAGAAAGATACCAGTAAGGGTGCAGGATG 727
Query 624 GGAAAGATTTGAATTTGACAAAGATGCTCCAGTTGATGATGAAGAAGTAGAAGAAGGTAC 683
||||||||||||||| |||||||| || |||||||||||||| ||| ||||||||||| |
Sbjct 728 GGAAAGATTTGAATTCGACAAAGAGGCCCCAGTTGATGATGAGGAACTAGAAGAAGGTGC 787
Query 684 TGACGATGATGCTGCCTTAGTCAAGCGCATGGGACATAGTTTTAGGTTTTCCGCTATCGA 743
||| |||||||||||||| ||||||||||||||||| |||| |||||||||||| |||||
Sbjct 788 TGATGATGATGCTGCCTTGGTCAAGCGCATGGGACAAAGTTATAGGTTTTCCGCCATCGA 847
Query 744 GGCGAAACGGGAAGAGCAACTAAAAGCCGCCCATGATGAGGCCATGTTTGGTGCACC-AG 802
||| ||| |||||||||| | ||||||||||| ||||||||||||||||| | ||| |
Sbjct 848 GGCAAAAAGGGAAGAGCAGTTGAAAGCCGCCCACGATGAGGCCATGTTTGGAGTACCCA- 906
Query 803 CAGGCCAAACTCCTACAAATAACACCGACGATAATGGTACAGAGACAACTAATGTTGAGG 862
|||||||||||||||| | ||||||| |||| ||| |||||||| ||||||||| |||
Sbjct 907 CAGGCCAAACTCCTACCGAGAACACCGGCGATGATGTTACAGAGATAACTAATGTAAAGG 966
Query 863 ACGATGAAGGAGAAAGCAACAGTGGCGCGATAAGTCTTCTTAGCGAGAAGGTGCTTGCAA 922
|||||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 967 ACGATGAAGGAGAAAGCAACAGTGGCGCGATAAGTCTTCTAAGTGAAAAGGTGCTTGCAA 1026
Query 923 AACAACAAGGATCTTGGCGTGACAGAGCTCGCAAGTCATGA 963
|||| ||||||||||||||||||||||||||||||||||||
Sbjct 1027 AACAGCAAGGATCTTGGCGTGACAGAGCTCGCAAGTCATGA 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5