BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg897660 Length=258 Score E Sequences producing significant alignments: (Bits) Value AT3G48185.1 | Symbols: | unknown protein; Has 4 Blast hits to ... 394 2e-109 > AT3G48185.1 | Symbols: | unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17793011-17793543 REVERSE LENGTH=533 Length=533 Score = 394 bits (213), Expect = 2e-109 Identities = 247/262 (94%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 1 ATGTTTGTATCTTCATCCACGTGTGCGTACGAGATCCAAAAGGGGAATCAAGCGTCTCGG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 ATGTTTGTATCTTCATCCACGTGTGCGTACGAGATCCAAAAGGGGAATCAAGCGTCTCGG 296 Query 61 TCCGATCCTTCGCTGCTTCAAAGCGATCTTCATCTTGAAAATCACCAAATCAAGTGTGt- 119 |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 297 TCCGATCCTTCGCTGCATCAAAGCGATCTTCATCTTGAAAATTACCAAATCAAGTGTGTG 356 Query 120 t-tttattatctcttt-tttctctttttgtgtttctttttcttttgactaccttttgtat 177 | ||| ||| |||||| ||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 357 TGTTT-TTA-CTCTTTCTTT-TCTTTTTGTGTTTCTTTTTCTTTTGACTACCCTTTGTAT 413 Query 178 ttctatttgcttctttttttctttcttccgcatatctcttttttc-gatcggtgttttgg 236 ||||||||||||||||||||||| |||||| ||||||| |||||| |||||||||||||| Sbjct 414 TTCTATTTGCTTCTTTTTTTCTT-CTTCCGAATATCTCCTTTTTCCGATCGGTGTTTTGG 472 Query 237 tttGACTGATTTAGATTTATGA 258 | ||||||||||||| |||||| Sbjct 473 TCTGACTGATTTAGACTTATGA 494 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11762653266 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5