BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897660

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G48185.1 | Symbols:  | unknown protein; Has 4 Blast hits to ...   394    2e-109


> AT3G48185.1 | Symbols:  | unknown protein; Has 4 Blast hits to 
4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 
0 (source: NCBI BLink). | chr3:17793011-17793543 REVERSE LENGTH=533
Length=533

 Score =  394 bits (213),  Expect = 2e-109
 Identities = 247/262 (94%), Gaps = 8/262 (3%)
 Strand=Plus/Plus

Query  1    ATGTTTGTATCTTCATCCACGTGTGCGTACGAGATCCAAAAGGGGAATCAAGCGTCTCGG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  237  ATGTTTGTATCTTCATCCACGTGTGCGTACGAGATCCAAAAGGGGAATCAAGCGTCTCGG  296

Query  61   TCCGATCCTTCGCTGCTTCAAAGCGATCTTCATCTTGAAAATCACCAAATCAAGTGTGt-  119
            |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| 
Sbjct  297  TCCGATCCTTCGCTGCATCAAAGCGATCTTCATCTTGAAAATTACCAAATCAAGTGTGTG  356

Query  120  t-tttattatctcttt-tttctctttttgtgtttctttttcttttgactaccttttgtat  177
            | ||| ||| |||||| ||| ||||||||||||||||||||||||||||||| |||||||
Sbjct  357  TGTTT-TTA-CTCTTTCTTT-TCTTTTTGTGTTTCTTTTTCTTTTGACTACCCTTTGTAT  413

Query  178  ttctatttgcttctttttttctttcttccgcatatctcttttttc-gatcggtgttttgg  236
            ||||||||||||||||||||||| |||||| ||||||| |||||| ||||||||||||||
Sbjct  414  TTCTATTTGCTTCTTTTTTTCTT-CTTCCGAATATCTCCTTTTTCCGATCGGTGTTTTGG  472

Query  237  tttGACTGATTTAGATTTATGA  258
            | ||||||||||||| ||||||
Sbjct  473  TCTGACTGATTTAGACTTATGA  494



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11762653266


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5