BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897669
Length=483
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48230.1 | Symbols: | Protein of Unknown Function (DUF239) ... 363 1e-99
> AT3G48230.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr3:17855112-17858120 FORWARD LENGTH=1660
Length=1660
Score = 363 bits (196), Expect = 1e-99
Identities = 240/260 (92%), Gaps = 8/260 (3%)
Strand=Plus/Plus
Query 1 ATGATCAACAAAACGGAAAAAATAAGAGTTTGGCAGGTGTGGAACCAAAACGGCACCAGC 60
|||||||||||| ||| ||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 621 ATGATCAACAAAGCGGGAAAAAGAAGAGTTTGGCAGGTTTGGAACCAAAACGGCACCAGC 680
Query 61 TGTCCTGAAC-AAACTATACCCATAAGACATAGCATGGTC-AGGCTTAAACGATTTAGGA 118
||||||| || |||||||||||||||||| |||| ||||| ||| |||| |||||| ||
Sbjct 681 TGTCCTG-ACGAAACTATACCCATAAGACGTAGCGTGGTCGGGGC-TAAAAGATTTAAGA 738
Query 119 AAAATCATTGGACAGATGTTCGAGTCAATCGCCGAACAGTTCCATACGCCGCTGATGAGG 178
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 739 AAAAACATTGGACAGATGTTCGAGTCAATCGCCGAACAGTTCCATACGCCGCTGAGGAGG 798
Query 179 GACACGAGTACGCGCGAGATTGGAGAGGTGGTATATCTGCGGGGAATATATGGAACAGTG 238
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 GACACGAGTA--CGC--GATTGGAGAGGTGGTATATCTGCGGGGAATATATGGAACAGTG 854
Query 239 GCAACTATGAACGTGTGGAA 258
|||||||||||||| |||||
Sbjct 855 GCAACTATGAACGTTTGGAA 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23007239326
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5