BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897670
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35600.1 | Symbols: HDA7 | histone deacetylase7 | chr5:13770... 483 2e-135
AT5G63110.1 | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | ... 307 1e-82
> AT5G35600.1 | Symbols: HDA7 | histone deacetylase7 | chr5:13770121-13771712
REVERSE LENGTH=1230
Length=1230
Score = 483 bits (261), Expect = 2e-135
Identities = 685/881 (78%), Gaps = 63/881 (7%)
Strand=Plus/Plus
Query 115 CACAAGCTCATCCTCA-CATATGGCCTCGACCGCCACATGGAAATCAGCCGCCCATATCT 173
||||| |||||||||| | ||| |||| |||||||||||||||||| || |||| | ||
Sbjct 118 CACAACCTCATCCTCAGC-TATAACCTCCACCGCCACATGGAAATCAACCACCCAGACCT 176
Query 174 CGCCGGCGTTTTCGATTTC-ACACAATTCCACTCACCGGAGTATATCCAA-TTCCTCGCC 231
||||| | || ||||||| | | |||||||||| | ||||||||| ||| ||||||
Sbjct 177 CGCCGATGCTTCCGATTTCGA-AAAATTCCACTCGCTGGAGTATAT-CAACTTCCTCAAA 234
Query 232 TCCCTTACGCC-GATGAA-TTTAAAGGATCCT--TCCGTCTCG-CT-TAACAAAAGTC-- 283
||| | ||||| || || ||| |||||| ||| || || || | | ||| ||
Sbjct 235 TCCGTCACGCCGGA--AACCGTAACCGATCCTCATCCTTC-CGTCTCTGA-AAACCTCAA 290
Query 284 GCTTCTTCGACCTAGATGTGAACCGGCACACAAACAGTACTATCTTCAACGGCCTCTTCG 343
|| |||| || |||||||| | || || || || ||||| | ||||||||
Sbjct 291 GC-GCTTCAACGTAGATGTGGATTGG------GACGGTCCTGTCTTCCATAACCTCTTCG 343
Query 344 ATTATTGCCGCGCCT-CTGCTGGTGGTTCT-TTAAGCGCCGCCGTC-AAATTGAACCGTC 400
||||||| || || | | |||||||||||| || |||||||||| | |||||||||||||
Sbjct 344 ATTATTGTCGTGCTTAC-GCTGGTGGTTCTATT-AGCGCCGCCG-CGAAATTGAACCGTC 400
Query 401 GGGAAGCCGATATTGCTATCAATTGGGCCGGTGGGATGCACCGTGCCAAGCGTGATCGTG 460
|||||||||||||| || || ||||||||||| ||||||| || ||| ||| |
Sbjct 401 AAGAAGCCGATATTGCCATAAACTGGGCCGGTGGTATGCACCATGTGAAGAAAGATAAAG 460
Query 461 CTTCTGGCTTTAGCTT-CGTCAATGACGTTGTGCTTGCGATTGC-CGAGTTGCTCAAGGT 518
||||||||||| | || |||||||||||||||||||||||| | |||||| || || |
Sbjct 461 CTTCTGGCTTT-GGTTATGTCAATGACGTTGTGCTTGCGATT-CTCGAGTTACT-AAAAT 517
Query 519 -TTTCAAGCGAGTTCTCTACATAGATATTGG-CTTCCGTCATGGGGATGCAGTGGAAGAA 576
||||||| |||||||||||||||| ||||| |||| |||||| |||| ||||||||||
Sbjct 518 CTTTCAAGAGAGTTCTCTACATAGAAATTGGTTTTCC-TCATGGTGATGAAGTGGAAGAA 576
Query 577 GCATTTTACAATACGGATAGAGTTATGACTGTTTCTTTCCACACA-TATACGGACACAC- 634
|||||| | |||| |||||||| ||||||||||||||||||| | | | |||||| |
Sbjct 577 GCATTTAAGGATACTGATAGAGTAATGACTGTTTCTTTCCACAAAGT-TGGGGACAC-CG 634
Query 635 CTTTCCCAAGAGAC---GGAG-ACAG-AAGG-GAGTTGTATTCTCTAAAAGCACCATTAA 688
| ||| ||| || | | | |||| | | ||||| || || ||||||||||
Sbjct 635 GAGACATAAGTGACTATGGGGAAGGGAAAGGACAATACTATTCACTCAATGCACCATTAA 694
Query 689 AGAATGGGCTCAAAGATAAAAGTCTTCGCAACTTGTTCAGACCTGTTATCAACAAG-GCA 747
|| |||| | | ||| |||||||| ||||||| ||||||||| || || ||
Sbjct 695 AGGATGGTTTGGATGATTTTAGTCTTCGTGGTTTGTTCATTCCTGTTATCCAC-AGAGCT 753
Query 748 ATGCAAGTTTATCAGCCAGAAGTTGTTGTTCTTCAGTGTGGTGCTGATTCATTAGCTGGT 807
||| || | ||| |||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 754 ATGGAAATCTATGAGCCAGAAGTAATTGTTCTTCAGTGTGGTGCTGATTCTTTAGCTGGT 813
Query 808 GA----TTT--TACATTCAACTTG-AAAGTCAAGGGTCACGGTGCTTGTC-T-CGAGTAC 858
|| ||| ||||||||||||| | |||||||||| |||| ||| | | | |||||
Sbjct 814 GATCCGTTTGGTACATTCAACTTGTCTA-TCAAGGGTCATGGTGATTG-CTTAC-AGTAC 870
Query 859 ATAAGATCTTTTAATGTTCCTCTCATGGTCTTGGGTGGTGGTGGTTCTACTTTTCGACAT 918
|||||||||||||||||||||||||| ||||||| ||||| |||| |||| ||| | ||
Sbjct 871 GTAAGATCTTTTAATGTTCCTCTCATGATCTTGGGGGGTGGAGGTTATACTCTTCCAAAT 930
Query 919 GTTGCTCGTTGCTGGTGCTATGAGACAGCGATTGCTGTTGG 959
|||||||||||||||||||||||||| |||||||| |||||
Sbjct 931 GTTGCTCGTTGCTGGTGCTATGAGACGGCGATTGCGGTTGG 971
> AT5G63110.1 | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1
| histone deacetylase 6 | chr5:25315624-25318347 REVERSE LENGTH=1746
Length=1746
Score = 307 bits (166), Expect = 1e-82
Identities = 511/671 (76%), Gaps = 50/671 (7%)
Strand=Plus/Plus
Query 326 TCTTCAACGGCCTCTTCGATTATTGCCGCGCCTCTGCTGGTGGTTCT-TTAAGCGCCGCC 384
||||| |||| || || |||| |||||| || || || || |||||| || | || |||
Sbjct 461 TCTTCGACGGACTTTTTGATTTTTGCCGTGCTTCCGCCGGAGGTTCTATT-GGTGCTGCC 519
Query 385 GTCAAATTGAACCGTCGGGAAGCCGATATTGCTATCAATTGGGCCGGTGGGATGCACCGT 444
|||||||| ||| | | ||| || ||||| ||||||||||||| ||||||| | |||| |
Sbjct 520 GTCAAATTAAACAGACAGGACGCTGATATCGCTATCAATTGGGGCGGTGGGCTTCACCAT 579
Query 445 GCCAAGCGTGATCG-TGCTTCTGGCTTTAGCT-TCGTCAATGACGTTGTGCTTGCGATTG 502
|| ||| | || |||||||| ||| ||| | || || ||| | ||||| | ||||
Sbjct 580 GCTAAG-AAAAGCGAGGCTTCTGGGTTTTGCTAT-GTAAACGACATCGTGCTAGGGATT- 636
Query 503 C-CGAGTTGCTCAAGGT-TTTCAAGCGAGTTCTCTACATAGATATTGGCT-TCCGTCATG 559
| |||||||||||| | ||| ||||| |||||||||||||||||| | | ||| ||||
Sbjct 637 CTGGAGTTGCTCAAGATGTTT-AAGCGGGTTCTCTACATAGATATT-GATGTCCACCATG 694
Query 560 GGGATGCAGTGGAAGAAGCATTTTACAATACGGATAGAGTTATGACTGTTTCTTTCCACA 619
| |||| |||||||||||| ||||||| || ||||||||||||||||||||||||||||
Sbjct 695 GAGATGGAGTGGAAGAAGCGTTTTACACCACTGATAGAGTTATGACTGTTTCTTTCCACA 754
Query 620 CATATACGGACA----CAC-----CTT-TCCCA-A-GAGACGGAGACA--GAA---GGGA 662
|| | |||| | | || || || | |||| | | | ||| ||||
Sbjct 755 AATTTGGGGACTTTTTCCCAGGAACTGGTCACATAAGAGATGTTGGCGCTGAAAAAGGGA 814
Query 663 GTTG-TATTCTCTAAAAGCACCATTAAA-GAATGGGCTCAAAGATAAAAGTCTTC-GCAA 719
| ||| ||||||| | ||| |||| || ||| | | ||| ||||| ||| |||
Sbjct 815 AATACTATGCTCTAAATGTTCCACTAAACGA-TGGTATGGACGATGAAAGT-TTCCGCAG 872
Query 720 CTTGTTCAGACCTGTTATCAACAAGGCAATGCAAGTTTATCAGCCAGAAGTTGTTGTTCT 779
|||||| |||||| ||||| | |||| ||| |||| ||||||||||| | ||||||||
Sbjct 873 CTTGTTTAGACCTCTTATCCAGAAGGTTATGGAAGTGTATCAGCCAGAGGCAGTTGTTCT 932
Query 780 TCAGTGTGGTGCTGATTCATTA-GCTGGTGAT---TT---TA-CATTCAACTTGAA-AGT 830
||||||||||||||| || ||| | ||||||| || | | |||||||| | |||
Sbjct 933 TCAGTGTGGTGCTGACTCCTTAAG-TGGTGATCGGTTGGGTTGC-TTCAACTT-ATCAGT 989
Query 831 CAAGGGTCACGGTGCTTGTCT-CGAGTACATAAGATCTTTTAATGTTCCTCTCATGGTCT 889
||||||||||| || ||| || || || | ||||||||| || |||||||||||||| |
Sbjct 990 CAAGGGTCACGCTGATTGCCTTCG-GTTCTTAAGATCTTACAACGTTCCTCTCATGGTGT 1048
Query 890 TGGGTGGTGGTGGTTCTACTTTTCGACATGTTGCTCGTTGCTGGTGCTATGAGACAGC-G 948
|||||||||| || | |||| ||||| ||||||| ||||||||||| |||||||| || |
Sbjct 1049 TGGGTGGTGGAGGGTATACTATTCGAAATGTTGCCCGTTGCTGGTGTTATGAGACTGCAG 1108
Query 949 ATTGCTGTTGG 959
||||||||||
Sbjct 1109 -TTGCTGTTGG 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59537846370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5