BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897673
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49530.1 | Symbols: | SIN-like family protein | chr5:201005... 401 6e-111
> AT5G49530.1 | Symbols: | SIN-like family protein | chr5:20100579-20104447
FORWARD LENGTH=2429
Length=2429
Score = 401 bits (217), Expect = 6e-111
Identities = 363/431 (84%), Gaps = 20/431 (5%)
Strand=Plus/Plus
Query 295 GTGGAAGTTGATTTGTCTATCGATATCCATTCCAGGAACTATGATTCCGAGTTTGGAACT 354
|||||| ||||||||||||| ||| | ||||| | ||||||||| ||| | ||||| ||
Sbjct 656 GTGGAAATTGATTTGTCTATGGATGTTCATTCGAAGAACTATGACTCCAATTTTGG-AC- 713
Query 355 AAATTAAATATGACTAAGCAGACCTCCTTGACAACGACGTGGAAGCAGCCTCCTACGTTG 414
|||||||||||||||||| |||||| ||| || ||||||||||||||||| |||
Sbjct 714 ----TAAATATGACTAAGCAGA---CCTTGAAAACAACATGGAAGCAGCCTCCTACTTTG 766
Query 415 GGTTATGCTATTGGTGTTCTTTCAGGTGATAAGTTACACTTGAATCCTGTTCATGCTGTT 474
| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 GATTATGCTGTTGGGGTTCTTTCAGGTGATAAGTTACACTTGAATCCTGTTCATGCTGTT 826
Query 475 GCACAGCTCCGACCTTCTTTCCAGTGTTTTTCTTCC-A-AAAAGAAACAACCA-GAAGC- 530
|| |||||||| || ||| | |||| | |||| ||| | |||| ||| || || ||||
Sbjct 827 GCCCAGCTCCGGCCGTCTATGCAGTCTCTTTCATCCGACAAAAAAAAGAAACAAGAAGAA 886
Query 531 TCC--TGAAGAATCTGTCAGAACGTCCGAAAAA-CTGAACAAAGGAGTGCAT--G-CTTC 584
||| |||||||||||| |||| ||| ||||| | |||||| |||||||| | ||||
Sbjct 887 TCCACTGAAGAATCTGTGGGAACATCC-AAAAAGCAGAACAAGGGAGTGCAGCAGGCTTC 945
Query 585 GACGGATCAGAAACCAATTCCTGAACAAAATTGGGTTACACTCAAGTATCATGGACTTCA 644
||||||||||||||||||| |||| ||| ||||||| ||||||||||||||||||||||
Sbjct 946 GACGGATCAGAAACCAATTAATGAAGAAACTTGGGTTTCACTCAAGTATCATGGACTTCA 1005
Query 645 ATCCGAGTTTTTCTCTAAATATCTTAATGGAATGATGGCGAATGGGAACTCTTCAATAGA 704
|||||| | || ||| | ||||||||| || ||||||||||||||||||||||| |||||
Sbjct 1006 ATCCGAATATTGCTCCAGATATCTTAACGGGATGATGGCGAATGGGAACTCTTCGATAGA 1065
Query 705 CTTCAACATGA 715
||||||||||
Sbjct 1066 TTTCAACATGA 1076
Score = 366 bits (198), Expect = 2e-100
Identities = 355/427 (83%), Gaps = 25/427 (6%)
Strand=Plus/Plus
Query 720 GGTCTTGAC-CTCCCTACCGA-TTGAAGAACGTGTG-AAGAAGTTGCTCTGCCAGGGACC 776
||||||| | ||||||||| | || ||||||||||| || |||||||||||| ||||| |
Sbjct 1153 GGTCTTG-CTCTCCCTACC-ACTTAAAGAACGTGTGCAA-AAGTTGCTCTGCGAGGGATC 1209
Query 777 TCAGTT-ATTTCAATACAGTGTTCTTAAGTATTATGCCCCAGAGTTATCAGACGAGGATT 835
|| ||| | ||| ||||||||||||||| | ||||| || ||||| |||||||||||||
Sbjct 1210 TCCGTTGA-TTCGATACAGTGTTCTTAAACACTATGCTCCTGAGTTCTCAGACGAGGATT 1268
Query 836 TCTTAAGGGTCGTCCAACAATATGCCTGGTTAGTTCAAGGTTTATGGACTCCCAAATCTG 895
||||| ||| | ||||| |||||| | ||||||||||||||||||||||||| ||| ||
Sbjct 1269 TCTTAGGGGCCCTCCAAGAATATGGCAGGTTAGTTCAAGGTTTATGGACTCCTAAAACT- 1327
Query 896 A-GCTGCTAAAACTAGA-GGAGGCTGTAGAGGATTCCAGGAATTATGTCCTGAT-GCTGT 952
| ||| ||||||||||| || | ||||||| | | ||||| ||||||||||| | ||||
Sbjct 1328 AGGCTACTAAAACTAGACGG-GCCTGTAGAAGCTGCCAGGGATTATGTCCTG-TCTCTGT 1385
Query 953 TCAGCAAGGGTTCAACTATAAACG-ACTCTGACA-TTGAAGCAACTGGTCACCTTAG-GG 1009
||||| || | |||||||||| | ||||||| | |||||||||| ||| | | || |
Sbjct 1386 TCAGCCAGAATACAACTATAAA-GTACTCTGA-AGTTGAAGCAACGGGTGA-C-AAGATG 1441
Query 1010 AAA----AAATGGAAACTATGTTGACTGTATTTGCCAAAGAAAGGCCTCTGCTATGTGAT 1065
||| ||||||| |||||||||| ||||||||||||||||| | ||||| |||
Sbjct 1442 AAACCTTTGATGGAAAGAATGTTGACTGAATTTGCCAAAGAAAGGCATGTGCTAAAAGAT 1501
Query 1066 TGGAAGTTCAAAGAGCCCACTGATGTTTCCTTCATAAAATCCTACCCGGAGATTGCTAAG 1125
|||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct 1502 TGGAAGTTCAAAGAGCCCACTGATGTCTCATTCATAAAATCCTACCCGGAGATTGTTAAG 1561
Query 1126 GAGCAAG 1132
|||||||
Sbjct 1562 GAGCAAG 1568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59086041465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5