BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897674
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48260.1 | Symbols: WNK3 | with no lysine (K) kinase 3 | chr... 2510 0.0
> AT3G48260.1 | Symbols: WNK3 | with no lysine (K) kinase 3 | chr3:17873012-17875220
REVERSE LENGTH=1551
Length=1551
Score = 2510 bits (1359), Expect = 0.0
Identities = 1489/1552 (96%), Gaps = 8/1552 (1%)
Strand=Plus/Plus
Query 1 ATGCGACAAGACGATAATAATTCCGAGGAAGAATTCGTTGAGATTGATCCCACTGGTCGC 60
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCGACAAGACGAGAATAACTCCGAGGAAGAATTCGTTGAGATTGATCCCACTGGTCGC 60
Query 61 TATGGCCGGTATAAAGAAGTTCTAGGCAAAGGAGCTTTCAAAGAAGTATACAGAGCATTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TATGGCCGGTATAAAGAAGTTCTAGGCAAAGGAGCTTTCAAAGAAGTATACAGAGCATTT 120
Query 121 GACCAACTTGAAGGAATCGAAGTGGCTTGGAACCAAGTTAAGTTAGATGATAAATTCTGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GACCAACTTGAAGGAATCGAAGTGGCTTGGAACCAAGTTAAGTTAGATGATAAATTCTGT 180
Query 181 AGCTCAGAGGATTTAGATCGTCTTTACTCTGAAGTTCACTTACTCAAAACCCTTAAACAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGCTCAGAGGATTTAGATCGTCTTTACTCTGAAGTTCACTTACTCAAAACCCTTAAACAC 240
Query 241 AAAAGCATCATCAAATTCTACACTTCTTGGATCGATCACCAACACATGACCATTAATCTC 300
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 241 AAAAGCATCATCAAATTCTACACTTCTTGGATCGATCACCAACACATGACTATCAATCTC 300
Query 301 ATCACCGAAGTCTTCACTTCTGGAAATCTTAGACAGTACCGGAAGAAGCATAAGTGTGTT 360
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 301 ATCACCGAAGTCTTCACTTCCGGAAATCTTAGACAGTACCGGAAGAAACATAAGTGTGTT 360
Query 361 GATCTAAGAGCATTGAAGAAATGGTCAATGCAGATTTTAGAAGGGCTTGTTTATCTACAT 420
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 361 GATCTAAGAGCATTGAAGAAATGGTCAAGGCAGATCTTAGAAGGGCTTGTTTATCTACAT 420
Query 421 AGTCATGATCCTCCTGTGATCCATAGAGATCTAAAATGTGATAACATTTTCATTAATGGG 480
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 AGCCATGATCCTCCTGTGATCCATAGAGATCTTAAATGTGATAACATTTTCATTAATGGG 480
Query 481 AACCAAGGTGAGGTCAAAATTGGAGATCTAGGGCTAGCCGCGATTCTGCACCGGGCTCGC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 AACCAAGGTGAGGTCAAAATTGGAGATCTAGGGCTAGCCGCGATTCTGCACCGCGCTCGC 540
Query 541 TCAGCTCATAGCGTCATCGGAACTCCTGAATTTATGGCGCCGGAACTCTATGAAGAGGAC 600
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCTGCTCATAGCGTCATCGGAACTCCTGAATTTATGGCGCCGGAACTCTATGAAGAGGAC 600
Query 601 TATAATGTACTTGTCGATATATACGCGTTTGGGATGTGTTTGCTTGAGCTGGTAACTTTT 660
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 601 TATAATGTACTTGTCGATATCTACGCGTTTGGAATGTGTTTGCTTGAGCTGGTAACTTTT 660
Query 661 GAATACCCGTATTCTGAATGCACCAATGCTGCTCAGATTTATAGGAAAGTTACATCGGGA 720
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 GAATACCCGTATTCCGAATGCACAAATGCTGCTCAGATTTATAGGAAAGTTACATCGGGA 720
Query 721 GTCAAACCAGCCTCTCTTTTAAATGTGACTGATCCTCAAGTGAGAACATTCATAGAGAAG 780
||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 721 ATCAAACCAGCCGCTCTTTTAAATGTGACTGATCCGCAAGTGAGAGCATTCATAGAGAAG 780
Query 781 TGTATCGCAAAGGTCTCACAACGCTTGTCAGCCAAGGAACTACTTGATGATCCTTTTCTG 840
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGTATCGCAAAGGTCTCGCAACGCTTGTCAGCCAAGGAACTACTTGATGATCCTTTTCTG 840
Query 841 AAATGCTACAATGAAAAGACCGAAA-CTGTCAACTCTCACAAAGAAAATGGCTACAACGG 899
||||||||||| ||||| ||||||| | |||| |||||||||||||||||| ||||||||
Sbjct 841 AAATGCTACAAGGAAAATACCGAAAAC-GTCAGCTCTCACAAAGAAAATGGTTACAACGG 899
Query 900 AAACGGAATCGTGGATACACTCTCGGATTCCGAGGTAGGCTTACTAACCGTAGAAGGCCA 959
||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||
Sbjct 900 AAACGGAATCGTGGATAAACTCTCGGATTCTGAGGTAGGCTTATTAACCGTAGAAGGCCA 959
Query 960 ACGTAAAGACCTCAACACAATCTTCCTAAAACTACGAATCACCGATTCCAAAGGTCAAAT 1019
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 960 ACGTAAAGACCTCAACACAATCTTCCTAAAACTACGTATCACCGATTCCAAAGGTCAAAT 1019
Query 1020 CCGCAATATCCACTTCCCATTTAACATAGAGACAGACACATCTTTCTCAGTCGCCATCGA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CCGCAATATCCACTTCCCATTTAACATAGAGACAGACACATCTTTCTCAGTCGCCATCGA 1079
Query 1080 AATGGTCGAAGAATTAGACTTAACCGATGACCAAGACATCTCAACAATCGTTAAAATGAT 1139
||||||||||||| |||||||||||||||| |||||||||||||| || | |||||||||
Sbjct 1080 AATGGTCGAAGAACTAGACTTAACCGATGATCAAGACATCTCAACGATAGCTAAAATGAT 1139
Query 1140 CGACACAGAGATACATTCACACATCCCCGATTGGATCCCTTCTCGTCTTATCGGTGATGA 1199
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1140 CGACACAGAGATACATTCACACATCCCCGATTGGACCCCTTCTCGACTTATCGGTGATGA 1199
Query 1200 TTCAGCGGTACACAAATGTTTGTCTTCTCCAGAAACGCTGCATTTAGACAGATTTCCTTC 1259
|||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 1200 TTCAGCGGTACAAAAATGTTTGTCTTCTCCAGAGACGCTCCATTTAGATAGATTTCCTTC 1259
Query 1260 AGGGAGAAAATTCTGGTCCTCTCCTAAAGCTGGAGCTGGAGATTCACGTTCACCGTTCGC 1319
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1260 AGGGAGAAAATTCTGGTCCTCTCCTAAAGCTGGAGCTGGAGACTCACGTTCACCGTTTGC 1319
Query 1320 GCCACGATCTAATTCTAAGCTGTCTTCATCACCA--A----TCAATCAAGACGTTGGAGT 1373
|||||| |||||||||||| |||| ||| ||| | | |||||||||| ||||| ||
Sbjct 1320 GCCACGGTCTAATTCTAAGTTGTCGTCAGCACAAGGACCGATCAATCAAGAAGTTGGGGT 1379
Query 1374 TATAGTagagaaacttgagtctttgttgaggaaacagagagaggagattgaagagatgca 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TATAGTAGAGAAACTTGAGTCTTTGTTGAGGAAACAGAGAGAGGAGATTGAAGAGATGCA 1439
Query 1434 gagagaTCAAGAACGTATAGTTTCTGAGTTTTTGAAAGAGTTTCCTCCTGAGATTTGTGA 1493
|||||||||||||||||| ||| ||||||| || ||||||||||||||||||||||||||
Sbjct 1440 GAGAGATCAAGAACGTATTGTTACTGAGTTCTTAAAAGAGTTTCCTCCTGAGATTTGTGA 1499
Query 1494 AGAGGCTTTGGTGAGATTGCAAGTTAAAGATTCTGATAGCTTACTGTGTTAG 1545
|||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1500 AGAGGCTTTGGTGAGATTGCAAGTTAAAGATTCTGATAACTTATTGTGTTAG 1551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76254627855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5