BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897697

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G06200.1 | Symbols:  | P-loop containing nucleoside triphosp...  78.7    3e-14


> AT3G06200.1 | Symbols:  | P-loop containing nucleoside triphosphate 
hydrolases superfamily protein | chr3:1877594-1879348 
FORWARD LENGTH=1335
Length=1335

 Score = 78.7 bits (42),  Expect = 3e-14
 Identities = 44/45 (98%), Gaps = 0/45 (0%)
 Strand=Plus/Plus

Query  199  GAAGAGGTTAGACATCTAAAGAACTTTGATTACGTTGTGGTGAAT  243
            ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  796  GAAGAGGTTAGGCATCTAAAGAACTTTGATTACGTTGTGGTGAAT  840



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13421488983


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5