BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897698

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G48490.1 | Symbols:  | unknown protein; Has 16 Blast hits to...   472    1e-132


> AT3G48490.1 | Symbols:  | unknown protein; Has 16 Blast hits 
to 16 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 1; Plants - 15; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:17961289-17961910 FORWARD 
LENGTH=522
Length=522

 Score =  472 bits (255),  Expect = 1e-132
 Identities = 350/391 (90%), Gaps = 25/391 (6%)
 Strand=Plus/Plus

Query  1    ATGTTTGGGAGGCTGAGACCACCGCCGTCGCCGCCGGATTGTCTGGAGAGATATCCGGCG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  50   ATGTTTGGGAGGCTGAGACCACCGCCGTCGCCGCCGGATTGTCTGGAGAGATATCCGGCG  109

Query  61   AAGATCATCAAAGACGATCCTCTCTCCGTCTACGAGTCAACACTGTTGAAGCTTAAGCAA  120
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  110  AAGATCATCAAAGACGATCCTCTCTCCGTCTACGAGTCAACACTGTTGAAACTTAAGCAA  169

Query  121  GGGTCAACAAGACTGGACACTACTTCATCAGAAACAGAAGGTGGAGAGAATCTGCCATCA  180
            ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct  170  GGGTCAACAAGACAGGACACTACTTCATCAGAAACAGAAGGTGAAGAGAATCTGTCATCA  229

Query  181  TCA-C--CGTCTCATGTCTTCTCTTCAGATACACAAGGAGACACTCATGATGTGACTCTG  237
             || |  ||||||||||||| ||||| |||||||||  ||        || |  || || 
Sbjct  230  ACATCATCGTCTCATGTCTTGTCTTCGGATACACAATTAG--------GA-G--ACACT-  277

Query  238  TGCAATGGCTCTGATGCAATGGCTATAGACTCGTGTGAAAACACGAAACAGCTAAAGAAC  297
              || ||      ||||||||||||||||||||||||||| | |||||||| |||||| |
Sbjct  278  --CA-TG------ATGCAATGGCTATAGACTCGTGTGAAAGCTCGAAACAGATAAAGAGC  328

Query  298  AAGAACCCATCAGTACTATCCATGTTTAGCAAGTACAAGAATCAAGCTCAAGCGCGAAAC  357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  329  AAGAACCCATCAGTACTATCCATGTTTAGCAAGTACAAGAATCAAGCTCAAGCACGAAAC  388

Query  358  ATGAAGACAGAGACTCAT-AATGATTTGTAA  387
            |||||||||||||||||  ||||||||||||
Sbjct  389  ATGAAGACAGAGACTCAGGAATGATTTGTAA  419



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18247192887


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5