BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897711
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48600.2 | Symbols: | SWIB complex BAF60b domain-containing... 828 0.0
> AT3G48600.2 | Symbols: | SWIB complex BAF60b domain-containing
protein | chr3:18010093-18011440 REVERSE LENGTH=839
Length=839
Score = 828 bits (448), Expect = 0.0
Identities = 520/555 (94%), Gaps = 4/555 (1%)
Strand=Plus/Plus
Query 1 ATGTCGCCAATTTCTAAAATTCTCGGAGGATGCAGGACACTGATGGCGAAGGCGGTGACT 60
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 78 ATGTCGCCAATTTCTAAGATTCTAGGAGGATGCAGGACACTGATGGCGAAGGCGGTGACT 137
Query 61 AATGCGACGGCTAACGGCGCCGGCTTTGATCCAAGAGGAGAAATACATAAGATTTTTCCA 120
||||||||||||| |||||||||| ||||| |||||||| ||| |||||||||||||||
Sbjct 138 AATGCGACGGCTACCGGCGCCGGCGTTGATAGAAGAGGAGGAATTCATAAGATTTTTCCA 197
Query 121 GTCTCAGAGTCGCTGGCTAGATTCGTCGGCCAAAGCGAAATCTCTTTTCCCATCGCCATG 180
||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||
Sbjct 198 GTCTCAGAGTCGCTGGCTAGATTCGTCGGCCAAAGCGAAGTCTCTTTTTCCACCGCCATG 257
Query 181 GAGAAAGTGGAGCAGTATACCGATGATCACGATCTCTGGAATCCGGAGAATATAGAGGAG 240
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 258 GAGAAAGTGGAGCAGTATACCGATGATCACAATCTTTGGAATCCGGAGAATATAGAGGAG 317
Query 241 ATACTGTGCGATGATAACTTGAAGACGATATTCGATGGCAAAGACAAAGTCGTCGGAGTC 300
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 318 ATACTGTGCGATGATAACTTGAAGACGATTTTCGATGGCCAAGACAAAGTCGTCGGAGTC 377
Query 301 AGAGAGATGACGGAGCTCTTGTTGCGACATTTTCCTAACGTCAGGAA-TATGTCGGCGAA 359
||||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||
Sbjct 378 AGAGAGATGACGGAGCTTTTGTTGCGACATTTTCCTAACGTTAG-AACTATGTCGGCGAA 436
Query 360 GGTGAAGGCTACCGGTGGAGCTACTATAGAAAAATGGGGGTTCAATGACATTGTGAAAGT 419
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 437 GGTGAAGGCTACCGGTGGAGGTACTATAGAAAAATGGGGGTTCAATGATATTGTGAAAGT 496
Query 420 CTCAGAGCCTCTGGCTAGATTCGTCGGG-AGAAGCGAAATCTCTTTTGTCGCCGCCTTGA 478
||||||||| ||||||||||||||||| | ||||||||||||||||| |||||||||||
Sbjct 497 CTCAGAGCCGCTGGCTAGATTCGTCGGCCA-AAGCGAAATCTCTTTTGACGCCGCCTTGA 555
Query 479 GAAAATTGCTAGAGTATACCAAAGATCACAACCTCTTAGATGAGGGTGTTACTCTGCTCG 538
||||||||||||| ||| || |||||||| ||| ||||||||||||||||||||||||
Sbjct 556 GAAAATTGCTAGATTATGCCTTTGATCACAAGCTCGTAGATGAGGGTGTTACTCTGCTCG 615
Query 539 AGTTTCCCTGGGTTA 553
||||||| ||| |||
Sbjct 616 AGTTTCCTTGGATTA 630
Score = 86.1 bits (46), Expect = 4e-16
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 120 AGTCTCAGAGTCGCTGGCTAGATTCGTCGGCCAAAGCGAAATCTCTTTT 168
|||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 494 AGTCTCAGAGCCGCTGGCTAGATTCGTCGGCCAAAGCGAAATCTCTTTT 542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29638146730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5