BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897712
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48610.1 | Symbols: NPC6 | non-specific phospholipase C6 | c... 2471 0.0
> AT3G48610.1 | Symbols: NPC6 | non-specific phospholipase C6 |
chr3:18011545-18014082 REVERSE LENGTH=1794
Length=1794
Score = 2471 bits (1338), Expect = 0.0
Identities = 1487/1561 (95%), Gaps = 2/1561 (0%)
Strand=Plus/Plus
Query 1 ATGAAACCATCATCAGCTTCAAGATTTTATTTATCTTTCTCACACTTTCTCATACTCTTT 60
|||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 124 ATGAAACCATCATCAGCTTCAAGATTTTCTTTAACTTTCTCACACTTTCTCACACTCTAC 183
Query 61 TGTCTTCTCACACAAACCCATGTAGCTCAAGGATCCCATCAATGGCAATCACCAATCAAA 120
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 184 TGTCTTCTCACACAAACACATGTAGCTCAAGGATCTCATCAATGGCAATCACCAATCAAA 243
Query 121 ACCGTCGTCGTTTTAGTACTAGAGAATCGATCTTTCGATCATCTCTTAGGATGGATGAAG 180
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 244 ACCGTCGTCGTTTTAGTGTTGGAGAATCGATCTTTCGATCATCTCTTAGGATGGATGAAG 303
Query 181 AACTCAGTAAACCCGACAATAAACGGTGTAACGGGTCAAGAATGTAACCCGGTTCCGAAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 AACTCAGTAAACCCGACAATAAACGGTGTAACGGGTCAAGAATGTAACCCGGTTCCGAAT 363
Query 241 TCCACACAAACCATATGTTTCACTAGTGATGCTGAGTTTGTGGATCCGGATCCGGGTCAT 300
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TCTACACAAACTATATGTTTCACTAGTGATGCTGAGTTTGTGGATCCGGATCCGGGTCAT 423
Query 301 TCGTTTGAAGCTGTTGAGCAACAAGTATTTGGGTCCGGGTCGGGTCAGATCCCGTCGATG 360
||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||| |||
Sbjct 424 TCGTTTGAAGCTGTTGAGCAACAAGTATTCGGGTCTGGGCCGGGTCAGATCCCGTCCATG 483
Query 361 ATGGGTTTTGTTGAGCAAGCGCTTTCCATGCCGGGAAATTTGTCGGAGACTGTAATGAAA 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 ATGGGTTTCGTTGAGCAAGCGCTTTCCATGCCGGGAAATTTGTCGGAGACTGTAATGAAA 543
Query 421 GGCTTTAGGCCTGAAGCTGTTCCGGTTTATGCCGAGCTGGTCAAAGAATTCGCTGTGTTC 480
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 544 GGCTTTAGGCCTGAAGCTGTTCCGGTTTATGCTGAGCTGGTTAAGGAATTCGCTGTGTTC 603
Query 481 GACCGGTGGTTTTCATCGATTCCCGGACCGACTCAACCGAACCGGTTATTTGTTTATTCG 540
|||||||||||||| || |||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 604 GACCGGTGGTTTTCTTCAATTCCCGGTCCGACTCAACCAAACCGGTTATTTGTCTATTCG 663
Query 541 GCTACTTCACATGGTTCAACAAGCCATGTCAAGAAACAACTCGCTCAAGGGTATCCACAG 600
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 664 GCTACCTCACATGGTTCCACTAGCCATGTCAAGAAACAACTCGCTCAAGGGTATCCACAG 723
Query 601 AAGACTATCTTCGATTCGCTCCACAGCAACGACATTGACTTCGGAATATACTTTCAGAAT 660
||||| || || |||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 724 AAGACGATATTTGATTCGCTTCATAGCAACGACATCGACTTCGGAATATACTTTCAGAAT 783
Query 661 ATTCCGACCACATTATTCTACCGGAATCTCCGACAGCTAAAATACATTTTCAATTTGCAT 720
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 784 ATTCCGACCACATTATTCTACCGTAATCTCCGACAGCTAAAGTACATTTTCAATTTGCAT 843
Query 721 CAATACGATCTAAAATTCAAGAAAGACGCAGCAAAAGGAAAGTTACCGAGCTTAACCGTC 780
||||||||| | ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 844 CAATACGATTTGAAATTCAAGAAAGACGCGGCCAAAGGAAAGTTACCGAGCTTAACCGTA 903
Query 781 ATCGAACCGAGGTATTTCGACCTCAAGGGCTTACCGGCCAACGATGATCACCCTTCGCAT 840
|||||||||||||||||||| ||||| || |||||||| |||||||||||||| ||||||
Sbjct 904 ATCGAACCGAGGTATTTCGATCTCAAAGGTTTACCGGCTAACGATGATCACCCGTCGCAT 963
Query 841 GACGTGGCTAACGGTCAAAAGCTGGTTAAAGAAGTGTACGAGGCACTTAGGGCGAGTCCA 900
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 964 GACGTGGCTAACGGTCAAAAGCTGGTTAAAGAAGTGTACGAGGCACTTAGGTCGAGTCCA 1023
Query 901 CAGTGGAACGAGACGCTCCTAGTCATAACTTATGATGAGCATGGTGGGTTCTATGATCAT 960
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1024 CAGTGGAACGAGACGCTCCTAGTTATAACCTATGATGAGCATGGTGGGTTCTATGATCAC 1083
Query 961 GTCAAGACTCCTTATGTCGGTATACCAAA-CCCGGATGGGAATACTGGACCGGCTCCTGG 1019
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1084 GTCAAGACTCCTTATGTCGGTATACCAAATCCCG-ATGGGAATACTGGACCGGCTCCTGG 1142
Query 1020 TTTCTTTAAATTCGACCGGTTAGGTGTTCGGGTTCCTACCATTATGGTTTCTCCTTGGAT 1079
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1143 TTTCTTTAAATTCGACCGGTTAGGTGTTCGTGTTCCTACCATTATGGTTTCGCCTTGGAT 1202
Query 1080 TAAAAAAGGAACCGTGGTGAGTGAAGCAAAAGGACCAACAGAGAGCTCAGAGTACGAGCA 1139
| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 TCAAAAAGGAACCGTCGTAAGTGAAGCAAAAGGACCAACAGAGAGCTCAGAGTACGAGCA 1262
Query 1140 TTCATCAATACCAGCAACCATCAAGAAACTATTCAATCTCTCTTCCAATTTCTTAACACA 1199
||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1263 TTCATCAATACCAGCGACAATCAAGAAACTCTTCAATCTCTCTTCCAATTTCTTAACACA 1322
Query 1200 TAGAGATGCTTGGGCTGCTACTTTCGAAGACGTTGTTTCTCACTTAACCACTCCTCGAAC 1259
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1323 TAGAGATGCATGGGCTGCTACTTTCGAAGACGTTGTATCTCACTTAACCACTCCTCGAAC 1382
Query 1260 CGATTGTCCCATGACTCTACCTGAAGTTGCACCCATGAGAGCCACTGAGCCTAAAGAGGA 1319
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1383 CGATTGTCCCATGACTCTACCTGAAGTTGCACCTATGAGAGCCACTGAGCCTAAAGAAGA 1442
Query 1320 CGCAGCTCTTTCTGAGTTTCAGGGTGAAGTAGTTCAGCTTGCAGCGGTTCTCAATGGTGA 1379
||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1443 CGCTGCTCTTTCTGAGTTTCAAGGTGAAGTGGTTCAGCTTGCAGCGGTTCTCAATGGTGA 1502
Query 1380 TCACTTCCTCAGTAGCTTCCCGGACGAAGTTGGGAAGAAGATGACTGTGAAACAAGCTCA 1439
|||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct 1503 TCACTTCCTCAGTAGCTTCCCGGAAGAAATTGGAAAGAAGATGACTGTGAAACAAGCTCA 1562
Query 1440 TGAATATGTCAAAGGAGCTACATCTCGGTTCATTAGAGCTAGTAAAGAGGCAATGAAGCT 1499
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1563 TGAGTATGTCAAAGGAGCTACTTCTCGGTTCATTAGAGCTAGTAAAGAGGCAATGAAGCT 1622
Query 1500 TGGTGCCGATAAATCTGCCATTGTCGATATGCGATCTTCGCTCACTACACGGCCACGCAA 1559
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1623 TGGTGCCGATAAATCTGCTATTGTCGATATGCGATCTTCGCTCACTACACGGCCACACAA 1682
Query 1560 C 1560
|
Sbjct 1683 C 1683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77308839300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5