BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897722

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G48490.1 | Symbols:  | unknown protein; Has 16 Blast hits to...   396    8e-110


> AT3G48490.1 | Symbols:  | unknown protein; Has 16 Blast hits 
to 16 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 1; Plants - 15; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:17961289-17961910 FORWARD 
LENGTH=522
Length=522

 Score =  396 bits (214),  Expect = 8e-110
 Identities = 287/322 (89%), Gaps = 5/322 (2%)
 Strand=Plus/Plus

Query  7    CCGCATTGTGTGGAGAGATATCCGGCGAAGATCATAAAAGACGATCCTCTCTCCGTCCAC  66
            ||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct  83   CCGGATTGTCTGGAGAGATATCCGGCGAAGATCATCAAAGACGATCCTCTCTCCGTCTAC  142

Query  67   TATTCAACTCTGCTGAAGCTTAAGCAAGGGTCAACGAGACTGG--A-GGCTTCATCAGAA  123
             | ||||| ||| |||| ||||||||||||||||| |||| ||  |   |||||||||||
Sbjct  143  GAGTCAACACTGTTGAAACTTAAGCAAGGGTCAACAAGACAGGACACTACTTCATCAGAA  202

Query  124  ACTGAGGGTGAGGAGAATCTGTCATCATCATCATCGTCTCATGTCTTCTCTTCGGATACA  183
            || || ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct  203  ACAGAAGGTGAAGAGAATCTGTCATCAACATCATCGTCTCATGTCTTGTCTTCGGATACA  262

Query  184  CAATTAGGAGACACTCATGATGCGATGGCTATAGACTCGTGTGAAAGCTTGAAACAGCTA  243
            ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||
Sbjct  263  CAATTAGGAGACACTCATGATGCAATGGCTATAGACTCGTGTGAAAGCTCGAAACAGATA  322

Query  244  AAGAACAAGAACCCATCTGTACTATCCATGTTTTCCAGGTACAAGAATCTAGCTCAAGCA  303
            |||| |||||||||||| |||||||||||||||  || ||||||||||| ||||||||||
Sbjct  323  AAGAGCAAGAACCCATCAGTACTATCCATGTTTAGCAAGTACAAGAATCAAGCTCAAGCA  382

Query  304  CAAAAC-TCAACAACAGAGACT  324
            | |||| | || | ||||||||
Sbjct  383  CGAAACATGAAGA-CAGAGACT  403



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15231127947


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5