BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897736
Length=1833
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase fa... 2531 0.0
AT5G23690.1 | Symbols: | Polynucleotide adenylyltransferase fa... 1175 0.0
AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 119 1e-25
> AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase
family protein / RNA recognition motif (RRM)-containing protein
| chr3:18103152-18110216 FORWARD LENGTH=2766
Length=2766
Score = 2531 bits (1370), Expect = 0.0
Identities = 1527/1602 (95%), Gaps = 13/1602 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGTTTTAAGTCTGGGTTTCTTCTCTTGCAGATCCCATTTTCCTGTTCTTCCCCTG 60
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 ATGGCGGTTTTAAGTGTGGGTTTCTTCGCTTGCAGATCCCATTTTCCTGTTCTTCCCCTG 180
Query 61 TTTTACTGTTTCTCCAAGGTTCAGTTCAACACTGTTGCTGCTGCAATTGAGACTGTGGAT 120
|||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 181 TTTTACTGTTTCTCGAAGGTTCAGCTCAACACTGTTGCTGCTGCAATGGAGACTGTGGAT 240
Query 121 GACAAGGACAGTGATCATC-T--TGAGAAGGGTTCTGATAGGACGAGTAAAGCACCAGAG 177
||||| ||||||||||||| | ||| ||||||||| ||| |||||||||||||||||||
Sbjct 241 GACAAAGACAGTGATCATCATCATGACAAGGGTTCTAATAAGACGAGTAAAGCACCAGAG 300
Query 178 TGGAAGAAATTGAATTCAAAAGACCTTGGGATAACTAGTTCTATGATTTCAAAGCCCACA 237
||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||
Sbjct 301 TGGAAGAAATTGAATTCAAAAGACCTTGGGATAACCACTTCTATGATTTCAAAGCCTACA 360
Query 238 CGACTAGTGCTAAATGGCCTTAAGAGTAAAGGATATGATGTTTATCTTGTGGGAGGCTGT 297
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 CGAATAGTGCTAAATGGCCTTAAGAGTAAAGGATATGATGTTTACCTTGTGGGAGGCTGT 420
Query 298 GTACGGGATCTTATTTTGAAGCGGACGCCAAAAGACTTCGATATACTCACTTCTGCGGAA 357
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTACGCGATCTTATTTTGAAGCGGACGCCAAAAGACTTCGATATACTCACTTCTGCGGAA 480
Query 358 CTTAGAGAGGTTGTTCGGACTTTCTCAAGATGTGAAATTGTTGGAAAAAGGTTTCCTATA 417
||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||
Sbjct 481 CTTAGAGAGGTTGTTCGGAGTTTCTCAAGATGTGAAATAATTGGAAAAAAATTTCCTATA 540
Query 418 TGTCATGTGCACGTTGGGAATGAGATGATAGAGGTTTCGAGTTTTAGCACCTCTGCACAA 477
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 541 TGTCATGTGCACATTGGGAATGATATGATAGAGGTTTCGAGTTTTAGCACCTCTGCTCAA 600
Query 478 AATTCTCCAAGAAACATGAGAACGGGTTCTGGAAAATCCAATGGCTCCTATGACGAGGAC 537
||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 601 AATTCTCTAAGAAACACAAGAACGGGTTCTGGAAAATCTAATGGTTCCTATGACGAGGAC 660
Query 538 AACACCCGTTTCAATAACTGCTTGCAGCGTGATTTCACAATTAATGGGTTGATGTTTGAT 597
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGTATCCGTTTCAATAACTGCTTGCAGCGTGATTTCACAATTAATGGGTTGATGTTTGAT 720
Query 598 CCATATGCCGAAGTTGTATATGACTATCTTGGGGGAATAGAAGACATTAAAAAAGCTAAG 657
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCATATGCCAAAGTTATATATGACTATCTTGGGGGAATAGAAGACATTAAAAAAGCTAAG 780
Query 658 ATACGGACAGTGTTTCATGCTGGCACATCTTTTCAAGAGGACTGTGCCAGGATTCTTCGT 717
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 781 GTACGGACAGTGTTTCATGCTGGCACATCATTTCAAGAGGACAGTGCCAGGATTCTTCGT 840
Query 718 GGGACAAGAATTGCTGCGCGTTTAGGTTTTACAATCTCCAAGGAAACAGCTCATTTCTTA 777
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 841 GGAACAAGAATTGCTGCGCGTTTAGGTTTTACAATTTCCAAGGAAACAGCTCATTTCTTA 900
Query 778 AAGAACCTTTCCTTCTTAGTACAAAGGCTCCACAGGGGAAGAATCTTGATGGAAATGAAT 837
||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 901 AAGAACCTTTCCTTCCTAGTACAAAGACTCCACAGGGGAAGAATCTTGTTGGAAATGAAT 960
Query 838 TACATGTTAGCGTATGGATCAGCAGAAGCTTCTTTACGATTGTTGTGGAAATTTGGGATA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TACATGTTAGCGTATGGATCAGCAGAAGCTTCTTTACGATTGTTGTGGAAATTTGGGATA 1020
Query 898 CTAGAAATTCTTTTACCAATTCAGGCAGCATATCTCGTTCACACTGGGTTCAAGAGACGC 957
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1021 CTAGAAATTCTTTTACCAATTCAGGCAGCATATCTCGTTCGCACTGGTTTCAAGAGACGC 1080
Query 958 GACAAAAGGAGTAACTTGCTTCTGTCTCTCTTTGGAAATTTGGATAAATTGTTGGCTCCT 1017
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1081 GACAAAAGGAGTAACTTGCTTCTGTCTCTCTTCGGAAATTTGGATAAATTGTTGGCTCCT 1140
Query 1018 GATAGACCTTGCCACAGCAGCTTGTGGCTAACAATCTTGGCTCTTCACAAAGCACTTGCT 1077
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1141 GATAAACCTTGCCACAGCAGCTTATGGCTAACAATCTTGGCTCTTCACAAAGCACTTGCT 1200
Query 1078 GATCAACCTCGATATCCTTCAGTGGTAGCCGCGTTTAGCCTTGCTGTCCACAATGGTGGA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GATCAACCTCGATATCCTTCAGTGGTAGCCGCGTTTAGCCTTGCTGTCCACAATGGTGGA 1260
Query 1138 GATGTTCTAGAAGCTGTAAAAA-TCACCAGGAAAGTCACAAAGCCACATAATAGAAGCTT 1196
|||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1261 GATGTTTTAGAAGCTGTAAAAAAT-ACCAGGAAAGTCACAAAGCCACATAATAGAAGCTT 1319
Query 1197 CTTTGAGCTACTGGAGCCAGAGGAACTGGACTCCCAAACCTTGTTGGATGAAGTTATGGA 1256
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1320 CTTTGAGCTACTGGAGCCAGAGGAAATGGACTCCCAAACCTTGTTGGATGAAGTCATGGA 1379
Query 1257 TTTTGATTCATCTATCAAAGAAGCCTTGGGACAGATGACTGATGGGAGATTTATTTCTAA 1316
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1380 TTTTGATTCATCTATCAAAGAAGCCTTGGGACAGATGACTGATGGGAGGTTTATTTCCAA 1439
Query 1317 GGCTATGGCAGCGTACCCTCAGGCCCCATATTCTGATATGGTTTTCATACCGTTGCAATT 1376
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1440 GGCTATGGCAGCGTACCCTCAGGCCCCATATTCCGATATGGTTTTCATACCGTTGCAATT 1499
Query 1377 GTATCTAGATGCAAGACGTATATTCGAGTGTGTGAAAGAAAATGGGCAGAAGGGATTTGT 1436
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GTACCTAGATGCAAGACGAATATTCGAGTGTGTGAAAGAAAATGGGCAGAAGGGATTTGT 1559
Query 1437 GCCTAAGCAAGACAGTAAGCGAGAGCCAGAAGATGATTTGGAGACCAACCCTATTCTGAA 1496
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1560 GCCTAAGCAAGACAGTAAGCGAGAGCCAGAAGATGATTTGGAGACCAAACCGATTCTGAA 1619
Query 1497 GAAACATAAGGAAAAATCCGAGGAG-ACAACGAAAGGATTTGCTGAGATCAAAGGAAAGG 1555
||||||||||||||| ||||||||| | ||| || ||| || |||||||||||| ||
Sbjct 1620 GAAACATAAGGAAAATTCCGAGGAGGAGAAC-AA-GGA---GC--AGATCAAAGGAACGG 1672
Query 1556 TCGAGTTGTTGAAGACAAAGTCTGATCAGGCTCCACTGAAGG 1597
||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct 1673 TCGAGTTGTTGGAGACAAAATCTGATCAGGCTCCAGTGAAGG 1714
Score = 200 bits (108), Expect = 4e-50
Identities = 161/186 (87%), Gaps = 6/186 (3%)
Strand=Plus/Plus
Query 1601 TTCCCTCAAGAAAAAAGACGCTCTCTGTTTCCCAGGTCTCT-T-GCCATACTAACATATC 1658
|||||||||||||||||||||||| ||||| | | |||| | || | ||||| || |
Sbjct 1796 TTCCCTCAAGAAAAAAGACGCTCTATGTTTGCT-G-TCTCCCTCGCGACACTAAAATGCC 1853
Query 1659 AAATATCATCAATTTCTTCAAAGATGTTGGACAAGTTGTTAGTGTTCAACTTGATTT-AA 1717
| |||||||| ||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1854 AGATATCATCGATTTCTTCAAAGATGTTGGACAAGTTGTTAGTGTTCAACTT-ACTACAA 1912
Query 1718 AACGCGACGGTAAGCGTTTGTCCAGTGGCTTTGTTGAGTTTGCTTCTGCCAACGAAGCAA 1777
||||| ||||| ||||||||||| |||||| ||||||||||||||||| ||||||||||
Sbjct 1913 AACGCAACGGTTTGCGTTTGTCCACTGGCTTCGTTGAGTTTGCTTCTGCTAACGAAGCAA 1972
Query 1778 AGAAGG 1783
||||||
Sbjct 1973 AGAAGG 1978
> AT5G23690.1 | Symbols: | Polynucleotide adenylyltransferase
family protein | chr5:7987540-7990547 FORWARD LENGTH=1789
Length=1789
Score = 1175 bits (636), Expect = 0.0
Identities = 1200/1462 (82%), Gaps = 80/1462 (5%)
Strand=Plus/Plus
Query 1 ATGGCGGTTTTAAGTCTGGGTTTCTTCTCTTGCAGATCCCATTTT--CCTGTTC-T--TC 55
|||||| ||| |||| |||| || || ||||||||| || |||| ||||||| | ||
Sbjct 125 ATGGCGATTTCAAGTGTGGG-TT-TT-GCTTGCAGAT-CC-TTTTCCCCTGTTCGTACTC 179
Query 56 CCCTGTTTTACTGTTTCTCCAAGGTTCAGTTCAACACTGTTGCTGCTGCAATTGAGAC-- 113
|| || | |||| || | ||| | | ||||||||||||||||||||||||||||||
Sbjct 180 TCCAGTCTCACTGCTTATGGAAGATACGGTTCAACACTGTTGCTGCTGCAATTGAGACAA 239
Query 114 T-G-T--G---GA------TGACAAGGACAGTGATCATCTTGAGAAGGGTTCTGATAGGA 160
| | | | || || || ||||||||||| || || |||| ||||||| ||
Sbjct 240 TGGATGAGTCAGATGGTTTTGCCACGGACAGTGATCGTCAAGACAAGGTTTCTGAT--GA 297
Query 161 CGAGTAAAGCA-CCAGAGTGGAAGA-AATTGAATTCAAAAGACCTTGGGA-TAA-CTAGT 216
| || | | | |||||||| | || ||||||| ||||| ||| ||| ||| | ||
Sbjct 298 --ACCAAGGGATCGTGAGTGGAA-ACAACTGAATTCGAAAGATCTT-GGACTAAGC-AGC 352
Query 217 TCTATGATTTCAAAGCCCACACGACTAGTGCTAAATGGCCTTAAGAGTAAAGGATATGAT 276
|| |||||| |||| ||||| || |||||| ||||||||||| || |||||| |||||
Sbjct 353 TCAATGATTGCAAAATCCACAAGAAAAGTGCTTAATGGCCTTAAAAGCAAAGGACATGAT 412
Query 277 GTTTATCTTGTGGGAGGCTGTGTACGGGATCTTATTTTGAAGCGGACGCCAAAAGACTTC 336
||||| |||||||||||||||||||| ||||||||| |||||||||| || |||||||||
Sbjct 413 GTTTACCTTGTGGGAGGCTGTGTACGAGATCTTATTCTGAAGCGGACACCGAAAGACTTC 472
Query 337 GATATACTCACTTCTGCGGAACTTAGAGAGGTTGTTCGGACTTTCTCAAGATGTGAAATT 396
|||||||| || ||||| |||||||||||||| ||||| |||||| ||||||||||||||
Sbjct 473 GATATACTTACCTCTGCAGAACTTAGAGAGGTGGTTCGAACTTTCCCAAGATGTGAAATT 532
Query 397 GTTGGAAAAAGGTTTCCTATATGTCATGTGCACGTTGGGA-ATGAGATGATAGAGGTTTC 455
||||||| |||||||||||||||||| || ||| || ||| |||| | |||||||||||
Sbjct 533 GTTGGAAGAAGGTTTCCTATATGTCACGTACACATT-GGAGATGATTTAATAGAGGTTTC 591
Query 456 GAGTTTTAGCACCTCTGCACAAAATTCTCCAAGAAACATGAGAACGGGTTCTG-GAA-AA 513
||||||||| ||||||||||| |||||| | ||||| | |||||| | || || ||
Sbjct 592 GAGTTTTAGTACCTCTGCACAGAATTCTTCGAGAAATACGAGAAC-TG-AATGCAAAGAA 649
Query 514 TCCAATGGCTC--CT-ATGACGAGGACAACACCCGTTTCAATAACTGCTTGCAGCGTGAT 570
|| | |||||| | ||| |||||| | |||||| |||||||| ||||||||||||
Sbjct 650 TCGAGTGGCTCAGATGGTGATGAGGACTGTATCCGTTTGAATAACTGTTTGCAGCGTGAT 709
Query 571 TTCACAATTAATGGGTTGATGTTTGATCCATATGCCGAAGTTGTATATGACTATCTTGGG 630
||||||||||| |||||||||||||||||||||||| |||| |||||||||||| |||||
Sbjct 710 TTCACAATTAACGGGTTGATGTTTGATCCATATGCCAAAGTCGTATATGACTAT-TTGGG 768
Query 631 -GGAATAGAAGACATTAAAAAAGCT-AAGATACGGACAGTGTTTCATGCTGGCACATCTT 688
||||| ||||| |||| ||||||| ||| | || |||||| |||| |||||||||||||
Sbjct 769 AGGAATGGAAGATATTAGAAAAGCTAAAG-TTCGAACAGTGATTCACGCTGGCACATCTT 827
Query 689 TTCAAGAGGACTGTGC-CAGGATTCTTCGTGGGACAAGAATTGCTGCGCGTTTAGGTTTT 747
|||| |||||||||| | |||||||||||| | ||||||||||||||||||||||||
Sbjct 828 TTCACCAGGACTGTGCTC-GGATTCTTCGTGCAATAAGAATTGCTGCGCGTTTAGGTTTC 886
Query 748 ACAATCTCCAAGGAAACAGCTCA-TTTCTTAAAGAACCTTTCCTT-CTTAGTACAAAGGC 805
| ||| ||||| ||||| ||||| ||| || |||||||||||||| | |||||||||| |
Sbjct 887 AGAATGTCCAAAGAAACCGCTCATTTTATT-AAGAACCTTTCCTTAC-TAGTACAAAGAC 944
Query 806 TCCACAGGGGAAGAATCTTGATGGAAATGAATTACATGTTAGCGTATGGATCAGCAGAAG 865
| ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 945 TTGACAAGGGAAGGATCTTGATGGAAATGAATTACATGTTAGCTTATGGATCAGCAGAGG 1004
Query 866 CTTCTTT-ACGATTGTTGTGGAAATTTGGGATACTAGAAATTCTTTTACCAATTCAGGCA 924
||||||| | ||||| ||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1005 CTTCTTTGA-GATTGCTGTGGAAATTTGGGATACTTGAAATTCTTCTACCAATTCAGGCA 1063
Query 925 GCATATCTCGTTCACACTGGGTTCAAGAGACGCGACAAAAGGAGTAACTTGCTTCTGTCT 984
|||||||| | | || ||| |||| |||||| |||||||||| |||| |||||||||||
Sbjct 1064 GCATATCTTGCACGCAGTGGTTTCAGGAGACGTGACAAAAGGACTAACATGCTTCTGTCT 1123
Query 985 CTCTTTGGAAATTTGGATAAATTGTTGGCTCCTGATAGACCTTGCCACAGCAGCTTGTGG 1044
||||||| || |||||||||||||| || |||||||| ||||| ||||||||||| |||
Sbjct 1124 CTCTTTGCTAACTTGGATAAATTGTTAGCACCTGATAGGCCTTGTCACAGCAGCTTATGG 1183
Query 1045 CTAACAATCTTGGC-TCTTCACAAAGCACTTGCTGATCAACCTCGATA-TCCT-TCAGTG 1101
|| |||||||||| | |||||||||||||||||||| |||||||| | |||| | ||||
Sbjct 1184 ATAGCAATCTTGGCGT-TTCACAAAGCACTTGCTGATAAACCTCGA-AGTCCTAT-AGTG 1240
Query 1102 GTAGCCGCGTTTAGCCTTGCTGTCCACAA-TGGTGGAGATGTTCTAGAAGCTGTAAAAAT 1160
|| || ||||||||||||||||| ||||| || ||||||| ||||||||||||| ||||
Sbjct 1241 GTTGCTGCGTTTAGCCTTGCTGTTCACAACTG-TGGAGATATTCTAGAAGCTGTGGAAAT 1299
Query 1161 CACCAGGAA-AGTCACAAAGCCACATAATAGAAGCTTCTTTGAGCTACTGGAGCCAGAGG 1219
||| | ||| | |||| | |||||| ||| ||||||||| |||||| | ||||| ||||
Sbjct 1300 CACAAAGAAGA-TCACTAGGCCACACGATAAAAGCTTCTTCGAGCTAGTAGAGCCCGAGG 1358
Query 1220 A-A--CTGGACTCCCAAACCTTGTTGGATGAAGTTATGGATTTTGATTCATCTATCAAAG 1276
| | || |||| ||||||| ||||||| || || |||||| ||||| | |||||| |||
Sbjct 1359 AGAATCTCGACTTCCAAACCCTGTTGGACGAGGTCATGGATCTTGATGCTTCTATCGAAG 1418
Query 1277 AAGCCTTGGGAC-AGATGACTGATGGGAGATTT-ATTTCTAAGGCTATGGCAGCGTACCC 1334
| ||||| || |||||||||||| | |||| || || || |||||| |||| |||||
Sbjct 1419 ATGCCTTAA-ACCAGATGACTGATGCGT-ATTTTATATCGAAAGCTATGTCAGCTTACCC 1476
Query 1335 TCAGGCCCCATATTCTGATATGGT-TTTCATACCGTTGCAATTGTATCT-AGATGCAAG- 1391
||| || |||||||| ||| |||| ||| ||||||||||| |||| || ||| ||| |
Sbjct 1477 TCAAGCACCATATTCCGATTTGGTCTTT-ATACCGTTGCAGCTGTACCTTAGA-GCAGGC 1534
Query 1392 ACGTATATTCGAGTGTGTGAAA 1413
| | || ||||| |||||||||
Sbjct 1535 A-GAATCTTCGATTGTGTGAAA 1555
> AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:17050631-17052189 FORWARD LENGTH=1494
Length=1494
Score = 119 bits (64), Expect = 1e-25
Identities = 111/133 (83%), Gaps = 6/133 (5%)
Strand=Plus/Plus
Query 1654 ATATCAAATATCATCAATTTCTTCAAAGATGTTGGACAAGTTGTT-AGTGTTCAACTTGA 1712
|||||| ||||||||||||||||||||||||||||| |||||||| | ||||| |||| |
Sbjct 778 ATATCAGATATCATCAATTTCTTCAAAGATGTTGGAGAAGTTGTTCA-TGTTCGACTT-A 835
Query 1713 TT-TAAA-ACGCGACGGTAAGCGTTTGTCCAGTGGCTTTGTTGAGTTTGCTTCTGCCAAC 1770
|| |||| | || | || |||| | | | | || |||||||||||||||||||| |||
Sbjct 836 TTGTAAACA-GCCAGGGAAAGCATGCGGGCTGGGGTTTTGTTGAGTTTGCTTCTGCTAAC 894
Query 1771 GAAGCAAAGAAGG 1783
|||||| ||||||
Sbjct 895 GAAGCAGAGAAGG 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90712384815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5