BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg897736 Length=1833 Score E Sequences producing significant alignments: (Bits) Value AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase fa... 2531 0.0 AT5G23690.1 | Symbols: | Polynucleotide adenylyltransferase fa... 1175 0.0 AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 119 1e-25 > AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein | chr3:18103152-18110216 FORWARD LENGTH=2766 Length=2766 Score = 2531 bits (1370), Expect = 0.0 Identities = 1527/1602 (95%), Gaps = 13/1602 (1%) Strand=Plus/Plus Query 1 ATGGCGGTTTTAAGTCTGGGTTTCTTCTCTTGCAGATCCCATTTTCCTGTTCTTCCCCTG 60 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 121 ATGGCGGTTTTAAGTGTGGGTTTCTTCGCTTGCAGATCCCATTTTCCTGTTCTTCCCCTG 180 Query 61 TTTTACTGTTTCTCCAAGGTTCAGTTCAACACTGTTGCTGCTGCAATTGAGACTGTGGAT 120 |||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 181 TTTTACTGTTTCTCGAAGGTTCAGCTCAACACTGTTGCTGCTGCAATGGAGACTGTGGAT 240 Query 121 GACAAGGACAGTGATCATC-T--TGAGAAGGGTTCTGATAGGACGAGTAAAGCACCAGAG 177 ||||| ||||||||||||| | ||| ||||||||| ||| ||||||||||||||||||| Sbjct 241 GACAAAGACAGTGATCATCATCATGACAAGGGTTCTAATAAGACGAGTAAAGCACCAGAG 300 Query 178 TGGAAGAAATTGAATTCAAAAGACCTTGGGATAACTAGTTCTATGATTTCAAAGCCCACA 237 ||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| Sbjct 301 TGGAAGAAATTGAATTCAAAAGACCTTGGGATAACCACTTCTATGATTTCAAAGCCTACA 360 Query 238 CGACTAGTGCTAAATGGCCTTAAGAGTAAAGGATATGATGTTTATCTTGTGGGAGGCTGT 297 ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 361 CGAATAGTGCTAAATGGCCTTAAGAGTAAAGGATATGATGTTTACCTTGTGGGAGGCTGT 420 Query 298 GTACGGGATCTTATTTTGAAGCGGACGCCAAAAGACTTCGATATACTCACTTCTGCGGAA 357 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GTACGCGATCTTATTTTGAAGCGGACGCCAAAAGACTTCGATATACTCACTTCTGCGGAA 480 Query 358 CTTAGAGAGGTTGTTCGGACTTTCTCAAGATGTGAAATTGTTGGAAAAAGGTTTCCTATA 417 ||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||| Sbjct 481 CTTAGAGAGGTTGTTCGGAGTTTCTCAAGATGTGAAATAATTGGAAAAAAATTTCCTATA 540 Query 418 TGTCATGTGCACGTTGGGAATGAGATGATAGAGGTTTCGAGTTTTAGCACCTCTGCACAA 477 |||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 541 TGTCATGTGCACATTGGGAATGATATGATAGAGGTTTCGAGTTTTAGCACCTCTGCTCAA 600 Query 478 AATTCTCCAAGAAACATGAGAACGGGTTCTGGAAAATCCAATGGCTCCTATGACGAGGAC 537 ||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||| Sbjct 601 AATTCTCTAAGAAACACAAGAACGGGTTCTGGAAAATCTAATGGTTCCTATGACGAGGAC 660 Query 538 AACACCCGTTTCAATAACTGCTTGCAGCGTGATTTCACAATTAATGGGTTGATGTTTGAT 597 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 AGTATCCGTTTCAATAACTGCTTGCAGCGTGATTTCACAATTAATGGGTTGATGTTTGAT 720 Query 598 CCATATGCCGAAGTTGTATATGACTATCTTGGGGGAATAGAAGACATTAAAAAAGCTAAG 657 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CCATATGCCAAAGTTATATATGACTATCTTGGGGGAATAGAAGACATTAAAAAAGCTAAG 780 Query 658 ATACGGACAGTGTTTCATGCTGGCACATCTTTTCAAGAGGACTGTGCCAGGATTCTTCGT 717 |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 781 GTACGGACAGTGTTTCATGCTGGCACATCATTTCAAGAGGACAGTGCCAGGATTCTTCGT 840 Query 718 GGGACAAGAATTGCTGCGCGTTTAGGTTTTACAATCTCCAAGGAAACAGCTCATTTCTTA 777 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 841 GGAACAAGAATTGCTGCGCGTTTAGGTTTTACAATTTCCAAGGAAACAGCTCATTTCTTA 900 Query 778 AAGAACCTTTCCTTCTTAGTACAAAGGCTCCACAGGGGAAGAATCTTGATGGAAATGAAT 837 ||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 901 AAGAACCTTTCCTTCCTAGTACAAAGACTCCACAGGGGAAGAATCTTGTTGGAAATGAAT 960 Query 838 TACATGTTAGCGTATGGATCAGCAGAAGCTTCTTTACGATTGTTGTGGAAATTTGGGATA 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 TACATGTTAGCGTATGGATCAGCAGAAGCTTCTTTACGATTGTTGTGGAAATTTGGGATA 1020 Query 898 CTAGAAATTCTTTTACCAATTCAGGCAGCATATCTCGTTCACACTGGGTTCAAGAGACGC 957 |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 1021 CTAGAAATTCTTTTACCAATTCAGGCAGCATATCTCGTTCGCACTGGTTTCAAGAGACGC 1080 Query 958 GACAAAAGGAGTAACTTGCTTCTGTCTCTCTTTGGAAATTTGGATAAATTGTTGGCTCCT 1017 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1081 GACAAAAGGAGTAACTTGCTTCTGTCTCTCTTCGGAAATTTGGATAAATTGTTGGCTCCT 1140 Query 1018 GATAGACCTTGCCACAGCAGCTTGTGGCTAACAATCTTGGCTCTTCACAAAGCACTTGCT 1077 |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1141 GATAAACCTTGCCACAGCAGCTTATGGCTAACAATCTTGGCTCTTCACAAAGCACTTGCT 1200 Query 1078 GATCAACCTCGATATCCTTCAGTGGTAGCCGCGTTTAGCCTTGCTGTCCACAATGGTGGA 1137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 GATCAACCTCGATATCCTTCAGTGGTAGCCGCGTTTAGCCTTGCTGTCCACAATGGTGGA 1260 Query 1138 GATGTTCTAGAAGCTGTAAAAA-TCACCAGGAAAGTCACAAAGCCACATAATAGAAGCTT 1196 |||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1261 GATGTTTTAGAAGCTGTAAAAAAT-ACCAGGAAAGTCACAAAGCCACATAATAGAAGCTT 1319 Query 1197 CTTTGAGCTACTGGAGCCAGAGGAACTGGACTCCCAAACCTTGTTGGATGAAGTTATGGA 1256 ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 1320 CTTTGAGCTACTGGAGCCAGAGGAAATGGACTCCCAAACCTTGTTGGATGAAGTCATGGA 1379 Query 1257 TTTTGATTCATCTATCAAAGAAGCCTTGGGACAGATGACTGATGGGAGATTTATTTCTAA 1316 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 1380 TTTTGATTCATCTATCAAAGAAGCCTTGGGACAGATGACTGATGGGAGGTTTATTTCCAA 1439 Query 1317 GGCTATGGCAGCGTACCCTCAGGCCCCATATTCTGATATGGTTTTCATACCGTTGCAATT 1376 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1440 GGCTATGGCAGCGTACCCTCAGGCCCCATATTCCGATATGGTTTTCATACCGTTGCAATT 1499 Query 1377 GTATCTAGATGCAAGACGTATATTCGAGTGTGTGAAAGAAAATGGGCAGAAGGGATTTGT 1436 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 GTACCTAGATGCAAGACGAATATTCGAGTGTGTGAAAGAAAATGGGCAGAAGGGATTTGT 1559 Query 1437 GCCTAAGCAAGACAGTAAGCGAGAGCCAGAAGATGATTTGGAGACCAACCCTATTCTGAA 1496 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1560 GCCTAAGCAAGACAGTAAGCGAGAGCCAGAAGATGATTTGGAGACCAAACCGATTCTGAA 1619 Query 1497 GAAACATAAGGAAAAATCCGAGGAG-ACAACGAAAGGATTTGCTGAGATCAAAGGAAAGG 1555 ||||||||||||||| ||||||||| | ||| || ||| || |||||||||||| || Sbjct 1620 GAAACATAAGGAAAATTCCGAGGAGGAGAAC-AA-GGA---GC--AGATCAAAGGAACGG 1672 Query 1556 TCGAGTTGTTGAAGACAAAGTCTGATCAGGCTCCACTGAAGG 1597 ||||||||||| ||||||| ||||||||||||||| |||||| Sbjct 1673 TCGAGTTGTTGGAGACAAAATCTGATCAGGCTCCAGTGAAGG 1714 Score = 200 bits (108), Expect = 4e-50 Identities = 161/186 (87%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 1601 TTCCCTCAAGAAAAAAGACGCTCTCTGTTTCCCAGGTCTCT-T-GCCATACTAACATATC 1658 |||||||||||||||||||||||| ||||| | | |||| | || | ||||| || | Sbjct 1796 TTCCCTCAAGAAAAAAGACGCTCTATGTTTGCT-G-TCTCCCTCGCGACACTAAAATGCC 1853 Query 1659 AAATATCATCAATTTCTTCAAAGATGTTGGACAAGTTGTTAGTGTTCAACTTGATTT-AA 1717 | |||||||| ||||||||||||||||||||||||||||||||||||||||| | | || Sbjct 1854 AGATATCATCGATTTCTTCAAAGATGTTGGACAAGTTGTTAGTGTTCAACTT-ACTACAA 1912 Query 1718 AACGCGACGGTAAGCGTTTGTCCAGTGGCTTTGTTGAGTTTGCTTCTGCCAACGAAGCAA 1777 ||||| ||||| ||||||||||| |||||| ||||||||||||||||| |||||||||| Sbjct 1913 AACGCAACGGTTTGCGTTTGTCCACTGGCTTCGTTGAGTTTGCTTCTGCTAACGAAGCAA 1972 Query 1778 AGAAGG 1783 |||||| Sbjct 1973 AGAAGG 1978 > AT5G23690.1 | Symbols: | Polynucleotide adenylyltransferase family protein | chr5:7987540-7990547 FORWARD LENGTH=1789 Length=1789 Score = 1175 bits (636), Expect = 0.0 Identities = 1200/1462 (82%), Gaps = 80/1462 (5%) Strand=Plus/Plus Query 1 ATGGCGGTTTTAAGTCTGGGTTTCTTCTCTTGCAGATCCCATTTT--CCTGTTC-T--TC 55 |||||| ||| |||| |||| || || ||||||||| || |||| ||||||| | || Sbjct 125 ATGGCGATTTCAAGTGTGGG-TT-TT-GCTTGCAGAT-CC-TTTTCCCCTGTTCGTACTC 179 Query 56 CCCTGTTTTACTGTTTCTCCAAGGTTCAGTTCAACACTGTTGCTGCTGCAATTGAGAC-- 113 || || | |||| || | ||| | | |||||||||||||||||||||||||||||| Sbjct 180 TCCAGTCTCACTGCTTATGGAAGATACGGTTCAACACTGTTGCTGCTGCAATTGAGACAA 239 Query 114 T-G-T--G---GA------TGACAAGGACAGTGATCATCTTGAGAAGGGTTCTGATAGGA 160 | | | | || || || ||||||||||| || || |||| ||||||| || Sbjct 240 TGGATGAGTCAGATGGTTTTGCCACGGACAGTGATCGTCAAGACAAGGTTTCTGAT--GA 297 Query 161 CGAGTAAAGCA-CCAGAGTGGAAGA-AATTGAATTCAAAAGACCTTGGGA-TAA-CTAGT 216 | || | | | |||||||| | || ||||||| ||||| ||| ||| ||| | || Sbjct 298 --ACCAAGGGATCGTGAGTGGAA-ACAACTGAATTCGAAAGATCTT-GGACTAAGC-AGC 352 Query 217 TCTATGATTTCAAAGCCCACACGACTAGTGCTAAATGGCCTTAAGAGTAAAGGATATGAT 276 || |||||| |||| ||||| || |||||| ||||||||||| || |||||| ||||| Sbjct 353 TCAATGATTGCAAAATCCACAAGAAAAGTGCTTAATGGCCTTAAAAGCAAAGGACATGAT 412 Query 277 GTTTATCTTGTGGGAGGCTGTGTACGGGATCTTATTTTGAAGCGGACGCCAAAAGACTTC 336 ||||| |||||||||||||||||||| ||||||||| |||||||||| || ||||||||| Sbjct 413 GTTTACCTTGTGGGAGGCTGTGTACGAGATCTTATTCTGAAGCGGACACCGAAAGACTTC 472 Query 337 GATATACTCACTTCTGCGGAACTTAGAGAGGTTGTTCGGACTTTCTCAAGATGTGAAATT 396 |||||||| || ||||| |||||||||||||| ||||| |||||| |||||||||||||| Sbjct 473 GATATACTTACCTCTGCAGAACTTAGAGAGGTGGTTCGAACTTTCCCAAGATGTGAAATT 532 Query 397 GTTGGAAAAAGGTTTCCTATATGTCATGTGCACGTTGGGA-ATGAGATGATAGAGGTTTC 455 ||||||| |||||||||||||||||| || ||| || ||| |||| | ||||||||||| Sbjct 533 GTTGGAAGAAGGTTTCCTATATGTCACGTACACATT-GGAGATGATTTAATAGAGGTTTC 591 Query 456 GAGTTTTAGCACCTCTGCACAAAATTCTCCAAGAAACATGAGAACGGGTTCTG-GAA-AA 513 ||||||||| ||||||||||| |||||| | ||||| | |||||| | || || || Sbjct 592 GAGTTTTAGTACCTCTGCACAGAATTCTTCGAGAAATACGAGAAC-TG-AATGCAAAGAA 649 Query 514 TCCAATGGCTC--CT-ATGACGAGGACAACACCCGTTTCAATAACTGCTTGCAGCGTGAT 570 || | |||||| | ||| |||||| | |||||| |||||||| |||||||||||| Sbjct 650 TCGAGTGGCTCAGATGGTGATGAGGACTGTATCCGTTTGAATAACTGTTTGCAGCGTGAT 709 Query 571 TTCACAATTAATGGGTTGATGTTTGATCCATATGCCGAAGTTGTATATGACTATCTTGGG 630 ||||||||||| |||||||||||||||||||||||| |||| |||||||||||| ||||| Sbjct 710 TTCACAATTAACGGGTTGATGTTTGATCCATATGCCAAAGTCGTATATGACTAT-TTGGG 768 Query 631 -GGAATAGAAGACATTAAAAAAGCT-AAGATACGGACAGTGTTTCATGCTGGCACATCTT 688 ||||| ||||| |||| ||||||| ||| | || |||||| |||| ||||||||||||| Sbjct 769 AGGAATGGAAGATATTAGAAAAGCTAAAG-TTCGAACAGTGATTCACGCTGGCACATCTT 827 Query 689 TTCAAGAGGACTGTGC-CAGGATTCTTCGTGGGACAAGAATTGCTGCGCGTTTAGGTTTT 747 |||| |||||||||| | |||||||||||| | |||||||||||||||||||||||| Sbjct 828 TTCACCAGGACTGTGCTC-GGATTCTTCGTGCAATAAGAATTGCTGCGCGTTTAGGTTTC 886 Query 748 ACAATCTCCAAGGAAACAGCTCA-TTTCTTAAAGAACCTTTCCTT-CTTAGTACAAAGGC 805 | ||| ||||| ||||| ||||| ||| || |||||||||||||| | |||||||||| | Sbjct 887 AGAATGTCCAAAGAAACCGCTCATTTTATT-AAGAACCTTTCCTTAC-TAGTACAAAGAC 944 Query 806 TCCACAGGGGAAGAATCTTGATGGAAATGAATTACATGTTAGCGTATGGATCAGCAGAAG 865 | ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 945 TTGACAAGGGAAGGATCTTGATGGAAATGAATTACATGTTAGCTTATGGATCAGCAGAGG 1004 Query 866 CTTCTTT-ACGATTGTTGTGGAAATTTGGGATACTAGAAATTCTTTTACCAATTCAGGCA 924 ||||||| | ||||| ||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 1005 CTTCTTTGA-GATTGCTGTGGAAATTTGGGATACTTGAAATTCTTCTACCAATTCAGGCA 1063 Query 925 GCATATCTCGTTCACACTGGGTTCAAGAGACGCGACAAAAGGAGTAACTTGCTTCTGTCT 984 |||||||| | | || ||| |||| |||||| |||||||||| |||| ||||||||||| Sbjct 1064 GCATATCTTGCACGCAGTGGTTTCAGGAGACGTGACAAAAGGACTAACATGCTTCTGTCT 1123 Query 985 CTCTTTGGAAATTTGGATAAATTGTTGGCTCCTGATAGACCTTGCCACAGCAGCTTGTGG 1044 ||||||| || |||||||||||||| || |||||||| ||||| ||||||||||| ||| Sbjct 1124 CTCTTTGCTAACTTGGATAAATTGTTAGCACCTGATAGGCCTTGTCACAGCAGCTTATGG 1183 Query 1045 CTAACAATCTTGGC-TCTTCACAAAGCACTTGCTGATCAACCTCGATA-TCCT-TCAGTG 1101 || |||||||||| | |||||||||||||||||||| |||||||| | |||| | |||| Sbjct 1184 ATAGCAATCTTGGCGT-TTCACAAAGCACTTGCTGATAAACCTCGA-AGTCCTAT-AGTG 1240 Query 1102 GTAGCCGCGTTTAGCCTTGCTGTCCACAA-TGGTGGAGATGTTCTAGAAGCTGTAAAAAT 1160 || || ||||||||||||||||| ||||| || ||||||| ||||||||||||| |||| Sbjct 1241 GTTGCTGCGTTTAGCCTTGCTGTTCACAACTG-TGGAGATATTCTAGAAGCTGTGGAAAT 1299 Query 1161 CACCAGGAA-AGTCACAAAGCCACATAATAGAAGCTTCTTTGAGCTACTGGAGCCAGAGG 1219 ||| | ||| | |||| | |||||| ||| ||||||||| |||||| | ||||| |||| Sbjct 1300 CACAAAGAAGA-TCACTAGGCCACACGATAAAAGCTTCTTCGAGCTAGTAGAGCCCGAGG 1358 Query 1220 A-A--CTGGACTCCCAAACCTTGTTGGATGAAGTTATGGATTTTGATTCATCTATCAAAG 1276 | | || |||| ||||||| ||||||| || || |||||| ||||| | |||||| ||| Sbjct 1359 AGAATCTCGACTTCCAAACCCTGTTGGACGAGGTCATGGATCTTGATGCTTCTATCGAAG 1418 Query 1277 AAGCCTTGGGAC-AGATGACTGATGGGAGATTT-ATTTCTAAGGCTATGGCAGCGTACCC 1334 | ||||| || |||||||||||| | |||| || || || |||||| |||| ||||| Sbjct 1419 ATGCCTTAA-ACCAGATGACTGATGCGT-ATTTTATATCGAAAGCTATGTCAGCTTACCC 1476 Query 1335 TCAGGCCCCATATTCTGATATGGT-TTTCATACCGTTGCAATTGTATCT-AGATGCAAG- 1391 ||| || |||||||| ||| |||| ||| ||||||||||| |||| || ||| ||| | Sbjct 1477 TCAAGCACCATATTCCGATTTGGTCTTT-ATACCGTTGCAGCTGTACCTTAGA-GCAGGC 1534 Query 1392 ACGTATATTCGAGTGTGTGAAA 1413 | | || ||||| ||||||||| Sbjct 1535 A-GAATCTTCGATTGTGTGAAA 1555 > AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:17050631-17052189 FORWARD LENGTH=1494 Length=1494 Score = 119 bits (64), Expect = 1e-25 Identities = 111/133 (83%), Gaps = 6/133 (5%) Strand=Plus/Plus Query 1654 ATATCAAATATCATCAATTTCTTCAAAGATGTTGGACAAGTTGTT-AGTGTTCAACTTGA 1712 |||||| ||||||||||||||||||||||||||||| |||||||| | ||||| |||| | Sbjct 778 ATATCAGATATCATCAATTTCTTCAAAGATGTTGGAGAAGTTGTTCA-TGTTCGACTT-A 835 Query 1713 TT-TAAA-ACGCGACGGTAAGCGTTTGTCCAGTGGCTTTGTTGAGTTTGCTTCTGCCAAC 1770 || |||| | || | || |||| | | | | || |||||||||||||||||||| ||| Sbjct 836 TTGTAAACA-GCCAGGGAAAGCATGCGGGCTGGGGTTTTGTTGAGTTTGCTTCTGCTAAC 894 Query 1771 GAAGCAAAGAAGG 1783 |||||| |||||| Sbjct 895 GAAGCAGAGAAGG 907 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90712384815 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5