BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897748
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48950.1 | Symbols: | Pectin lyase-like superfamily protein... 2078 0.0
AT3G49162.1 | Symbols: | pseudogene of glycoside hydrolase fam... 252 8e-66
AT3G61490.1 | Symbols: | Pectin lyase-like superfamily protein... 209 5e-53
> AT3G48950.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:18148017-18149987 FORWARD LENGTH=1410
Length=1410
Score = 2078 bits (1125), Expect = 0.0
Identities = 1322/1417 (93%), Gaps = 14/1417 (1%)
Strand=Plus/Plus
Query 1 ATGATTAGGCCAATGTTTGGTATT-CTAGTCATTTTGGCTATACTCAGCTTTCCGGCGAT 59
|||||||| |||| ||||||| || |||||| ||||||||||| || |||||||||||
Sbjct 1 ATGATTAGACCAACGTTTGGT-TTACTAGTCTTTTTGGCTATATTCCTTTTTCCGGCGAT 59
Query 60 TGAGTCCCGGAGTCACCAAAATGT-GGTGTCTT-CAGGGATTAG-ATTTTCAGCATTGAA 116
||| ||||||||||||| |||| | |||| ||| || |||| | ||||||||| ||||
Sbjct 60 TGAATCCCGGAGTCACCGAAAT-TCGGTGACTTCCA-AGATT-GAATTTTCAGCGCTGAA 116
Query 117 TTGCCGGAAACATAGTGCAATATTGACTGACTTTGGTGCGGTTGGAGATGGAAAAACTTC 176
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 117 TTGCCGGAAACATAGTGCAATACTGACTGATTTTGGTGCGGTTGGAGATGGAAAAACTTC 176
Query 177 TAATACAAACGCGTTTAAGAAA-GCCATAAGCAAGCTCAGCCAAATGGCAACCGACGGTG 235
||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| || |
Sbjct 177 TAATACAAAAGCGTTT-AGAAATGCCATAAGCAAGCTCAGCCAAATGGCAACCGATGGCG 235
Query 236 GAGCTCAACTCGTAGTTCCTCCCGGAAAATGGCTTACGGGAAGTTTTAACCTTACCAGCC 295
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 236 GAGCTCAACTCGTAGTACCTCCCGGAAAATGGCTTACCGGAAGTTTTAACCTTACAAGCC 295
Query 296 ACTTT-ACTTTGTTCATCCAACGAGGGGCTACCATCCTTGCATCTCAGGATGAATCTGAA 354
| ||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 296 A-TTTCACTTTGTTCATCCAGCGAGGTGCTACCATCCTTGCATCTCAGGATGAATCTGAA 354
Query 355 TGGCCAGTGATCGCTCCTTTGCCATCTTACGGGAAAGGAAGAGACGGGACCGGAACCGGG 414
|||||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 355 TGGCCAGTTATCGCTCCATTGCCATCGTACGGGAAAGGAAGAGACGGAACCGGAACCGGG 414
Query 415 AGATTCAACAGTCTCATCTCCGGTACAAACTTAACCGACGTGGTTATAACCGGTAACAAT 474
|||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||
Sbjct 415 AGATTCAACAGTCTCATCTCCGGTACAAACCTAACCGACGTGGTTATCACTGGTAACAAC 474
Query 475 GGAACTATCAACGGACAGGGACAATATTGGTGGGATAAATTCAAAAAGAAGCAATTCAAG 534
||||| ||||||||||||||||| ||||||||||| |||||||| |||||||| |||||
Sbjct 475 GGAACGATCAACGGACAGGGACAGTATTGGTGGGACAAATTCAAGAAGAAGCAGTTCAAA 534
Query 535 TTAACAAGACCATACTTGATCGA-ACTCTTGTTCTCCAAAAACATTCAAATCTCGAACAT 593
|||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 535 ATAACAAGACCGTACTTGATCGAGA-TCTTGTTCTCCAAAAACATTCAAATCTCGAACAT 593
Query 594 CACATTGATCGATTCACCATCGTGGAATATTCATCCCGTCTATTGTAATAACGTCATTGT 653
||||||||||||||| || ||||||||||||||||| ||||||||||||| |||||||||
Sbjct 594 CACATTGATCGATTCGCCGTCGTGGAATATTCATCCTGTCTATTGTAATAGCGTCATTGT 653
Query 654 CAAATCCGTCACCGTTCTTGCTCCCGTCACTGTTCCCAACACCGACGGAATCAATCCAGA 713
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 654 CAAATCCGTCACCGTTCTTGCTCCCGTCACTGTTCCCAACACCGACGGTATCAATCCAGA 713
Query 714 TTCTTGCACAAACACATTGATCGAAGACTGCTACATAGTCTCCGGCGACGACTGCATCGC 773
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 714 TTCTTGCACAAACACATTGATCGAAGACTGTTACATAGTCTCCGGAGACGACTGCATCGC 773
Query 774 GGTAAAAAGCGGTTGGGACCAATACGGAATCAAATTCGGAATGCCAACGCAGCAACTCTC 833
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 774 CGTCAAAAGCGGTTGGGACCAATACGGAATCAAATTCGGAATGCCGACGCAGCAACTCTC 833
Query 834 CATCCGACGGCTCACATGCATCTCCCCAAAGAGTGCAGGAGTAGCCTTAGGAAGTGAAAT 893
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GATCCGACGGCTGACATGCATCTCCCCAAAGAGTGCAGGAGTAGCCTTAGGAAGTGAAAT 893
Query 894 GTCCGGAGGAATCAAAGACGTTAGAATTGAAGACGTGACTCTAACCAACACCGAATCCGC 953
||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 894 GTCCGGAGGAATCAAAGACGTTAGAATCGAAGATGTAACTCTAACCAACACCGAATCCGC 953
Query 954 AATCCGAATCAAAACTGCGGCGGGACGTGGAGCTTACGTCAAGGACATTTTCGCTAGGAG 1013
||||||||||||||||||| ||||||||| |||||||||||||| |||| |||||||||
Sbjct 954 CATCCGAATCAAAACTGCGGTGGGACGTGGCGCTTACGTCAAGGATATTTACGCTAGGAG 1013
Query 1014 GATAACAATGAAGACGATGAAATACGTTTTCTGGATGAGTGGAAACTACAATAGTCATCC 1073
||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1014 GATCACAATGAAGACGATGAAATATGTTTTCTGGATGAGTGGAAACTACGGTAGTCATCC 1073
Query 1074 TGACGAAGGATTTGATCCCAAGGCGTTGCCGGAAGTTACTAATATCAATTACCGCGATAT 1133
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1074 TGACGAAGGATTTGATCCCAAGGCGTTGCCGGAAATTACTAATATCAATTACCGCGATAT 1133
Query 1134 GACGGCGGAGAACGTTACCATGTCGGCGAGTCTTGACGGGATTCATAAAGATCCGTTTAC 1193
|||||||||||| ||||| ||||| |||||||| ||||||||| ||||||||||||||||
Sbjct 1134 GACGGCGGAGAATGTTACAATGTCAGCGAGTCTCGACGGGATTGATAAAGATCCGTTTAC 1193
Query 1194 GGGTATTTGTATATCGAATGTGACTATAGCTTTGGCAGATAAGGCTAAGAAGGTGCAGTG 1253
|||||||||||| ||||||||||||||||||||||| | |||||||||||| |||||||
Sbjct 1194 GGGTATTTGTATCTCGAATGTGACTATAGCTTTGGCGGCTAAGGCTAAGAAAATGCAGTG 1253
Query 1254 GAATTGTACAGATGTGGCTGGAGTTACCAGCAGAGTTACGCCAGAACCATGTAGTTTGTT 1313
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1254 GAATTGTACAGATGTGGCTGGAGTTACCAGCAGAGTTACGCCAGAGCCATGTAGTTTGTT 1313
Query 1314 GCCGGAGAAGAAAGCTCCGGCCAAGAATGAGGACTGTGCGTTTCCGTCTGATTTGATTCC 1373
||| ||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1314 GCCTGAGAAGAAAGCTCAGGCGAAGAATGTTGACTGTGCGTTTCCGTCTGATTTGATTCC 1373
Query 1374 GATTGAGAGTGTTGTATTGAAGAAGTGCTCTCTTTGA 1410
||||||||||||||||||||||||||||| |||||||
Sbjct 1374 GATTGAGAGTGTTGTATTGAAGAAGTGCTTTCTTTGA 1410
> AT3G49162.1 | Symbols: | pseudogene of glycoside hydrolase family
28 protein | chr3:18225379-18226805 REVERSE LENGTH=1192
Length=1192
Score = 252 bits (136), Expect = 8e-66
Identities = 379/491 (77%), Gaps = 37/491 (8%)
Strand=Plus/Plus
Query 921 TGAAGACGTGACTCTAACCAACAC-CGAATCCGCAATCCGAATCAAAACTGCGGCGGGAC 979
|||||| ||||| |||| |||||| | ||||||| |||||||||||||| || ||||
Sbjct 568 TGAAGAGGTGACACTAATCAACACAC-AATCCGCTATCCGAATCAAAACCGCTATAGGAC 626
Query 980 GTGGAGCTTACGTCAAGGACATTTTCGCTAGGAGGA-TAACAATGAAGACGATGAAATAC 1038
|||| | |||| |||| |||||||||||||||| || | || ||||||||||||||||||
Sbjct 627 GTGGCGGTTACATCAAAGACATTTTCGCTAGGA-GATTTACGATGAAGACGATGAAATAC 685
Query 1039 GTTTTCTGGATGAGTGGAAAC-TACAA--TAGTCATCCTG-ACGAAGGATTTGATCCCAA 1094
||||||||||||| || | || || | | ||||| | | | || |||||||||||
Sbjct 686 GTTTTCTGGATGACCGGTT-CGTATAAGCT-G-CATCCCGTAGGCGGG-TTTGATCCCAA 741
Query 1095 GGCGTTGCCGGA-AGTTA-CTAATATCAATTACCGCGATATGACGGCGGAGAACGTTACC 1152
|||||||||||| | ||| | |||||| ||||||| || ||||| || || ||||||||
Sbjct 742 GGCGTTGCCGGAGA-TTAGC-AATATCCATTACCGTGACATGACCGCAGAAAACGTTACA 799
Query 1153 ATGTCGGCGA-GTCTTGACGGGATTCATA-AA-GATCCGTTTACGGGTATT-TGTATATC 1208
|| ||||| | | || || |||| || | || | ||| ||||||||| || || || ||
Sbjct 800 ATTTCGGCAAAG-CTAGAAAGGAT-CA-AGAATGGTCCATTTACGGGT-TTATGCATGTC 855
Query 1209 GAATGTGACTATAGCTTTG--GCAGATAAGGCTAAGAAGGTGCAGTGGAATTGTACAGAT 1266
|| |||||||||||||||| || | | | |||||| |||||||||| || || |||
Sbjct 856 GAGTGTGACTATAGCTTTGTCGCCGG-ACC-CGAAGAAGCTGCAGTGGAACTGCACGGAT 913
Query 1267 GTGGCTGGAGTTACCAGCAGAGTTACGCCAGAACCATGTAGTTTGTTGCCGGAGAAGA-A 1325
|| | |||||||| || || ||||| || || || || |||||||| ||||| |||| |
Sbjct 914 GTCTCCGGAGTTACTAGTAGGGTTACACCGGAGCCGTGCAGTTTGTTACCGGATAAGAGA 973
Query 1326 AGCTCCGGCCAA-GAA-TGAGGACTGTGCGTTTCCGTCTGATTTGATTCCGATTGAGAGT 1383
| || | || | | | || |||||| ||||| | ||| |||||| |||||||||
Sbjct 974 A-CTAC----AATGGACTCAG-ACTGTGATTTTCCCACGGATAAGATTCCTATTGAGAGT 1027
Query 1384 GTTGTATTGAA 1394
||||| |||||
Sbjct 1028 GTTGTGTTGAA 1038
> AT3G61490.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:22758063-22760192 FORWARD LENGTH=1547
Length=1547
Score = 209 bits (113), Expect = 5e-53
Identities = 369/489 (75%), Gaps = 32/489 (7%)
Strand=Plus/Plus
Query 604 GATTCACCATCGTGGAATATTCATCCC-GTCTATTGTAATAACGTCATTGTCAAATCCGT 662
||||| ||||||||||| || || ||| || ||| ||| || |||| || ||| |||
Sbjct 662 GATTCTCCATCGTGGAACATCCA-CCCAGTGTATAGTAGCAATATCATCGTAAAAGGCGT 720
Query 663 CACCGTTC-TTGCTCCC-GTCACTGT-TCCCAACACCGACGGAATCAATCCAGATTCTTG 719
| || || | || ||| || | | ||| |||||||||||||||||||||||||||||
Sbjct 721 TA-CGATCATCGC-CCCGGT-AAAATCTCCGAACACCGACGGAATCAATCCAGATTCTTG 777
Query 720 CACAAACAC-ATTGATCGAAGACTGCTACAT-AGTCTCCGGCGACGACTGCATCGCGGTA 777
||| ||||| | |||||||||||| ||||| | | ||||||||||| |||||||| ||
Sbjct 778 CACGAACACGAG-GATCGAAGACTGTTACATCA-TATCCGGCGACGATTGCATCGCCGTG 835
Query 778 AAAAGCGGTTGGGACCAATACGGAATCAAATTCGGAATGCCAACGCAGCAACTC-TCCAT 836
|||||||| |||||| ||||||||||| |||||||||||| ||| |||| ||| | ||
Sbjct 836 AAAAGCGGATGGGACGAATACGGAATCTCATTCGGAATGCCGACGAAGCACCTCGTG-AT 894
Query 837 CCG-ACGGCTCACATGCATCTCCCCAAAGAGTGCAG-GAGTAGC-CTTAGGAAGTGAAAT 893
||| | | | || || ||||| || | || || | || | || || ||||| |||||
Sbjct 895 CCGTA-GATTAACCTGTATCTCACCGTACAGCGCCGCGA-TCGCTCTC-GGAAGCGAAAT 951
Query 894 GTCCGGAGGAATCAAAGACGTTAGAATTGAAGACGTGACT-C-TAACCAACACCGAATCC 951
|||||| |||||| ||||||| ||| ||||| | || | || |||| || ||||||
Sbjct 952 GTCCGGCGGAATCGAAGACGTGAGAGCGGAAGATATCACCGCATA-CCAA-ACAGAATCC 1009
Query 952 G-CAATCCGAATCAAAACTGCGGCGGGACGTGGAGCTTACGTCAAGGACATTTTCGCTAG 1010
| | | || || ||||| || | ||| | ||||||| ||| ||| |||| | || ||
Sbjct 1010 GGCG-TACGGATAAAAACCGCCGTAGGAAGAGGAGCTTTCGTGAAGAACATATACG-TAA 1067
Query 1011 GAGGATAACAATG-A-AGACGATGAAATACGTTTTCTGGATGAGTGGAAACTACAATAG- 1067
|||| | ||| | | |||||||||| ||||| ||||||| ||||| ||||| ||
Sbjct 1068 AAGGA-ATGAATCTACACACGATGAAATGGGTTTTTTGGATGACCGGAAATTACAA-AGC 1125
Query 1068 TCATCCTGA 1076
|||| ||||
Sbjct 1126 TCATGCTGA 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69477554280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5