BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897766
Length=2361
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49142.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1881 0.0
AT3G49140.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 811 0.0
AT5G24060.2 | Symbols: | Pentatricopeptide repeat (PPR) superf... 86.1 1e-15
> AT3G49142.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:18215788-18217848 REVERSE LENGTH=2061
Length=2061
Score = 1881 bits (1018), Expect = 0.0
Identities = 1115/1163 (96%), Gaps = 1/1163 (0%)
Strand=Plus/Plus
Query 1 GTGTTCGACGAAATTCCTGAGAGAAACGTAATTATCATTAATGTTATGATCAGAAGCTAT 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 286 GTGTTCGACGAAATTCCTGAGAGAAACGTAATTATCATTAATGTTATGATTAGAAGCTAT 345
Query 61 GTTAATAATGGGTTTTACCGTGAAGGTATTCAAGTGTTTGTGACGATGTGTAGTTGTCAT 120
|| ||||||||||||||| |||||||| || ||||||||| |||||||||| ||||| ||
Sbjct 346 GTGAATAATGGGTTTTACGGTGAAGGTGTTAAAGTGTTTGGGACGATGTGTGGTTGTAAT 405
Query 121 GTTAAACCTGATCATTACACTTTCCCGTGTGTTCTAAAGGCATGTTCTTGCTCTGGGAAT 180
|||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
Sbjct 406 GTTAGACCTGATCATTATACTTTCCCGTGTGTTCTAAAGGCGTGTTCTTGCTCTGGGACT 465
Query 181 ATTGTCATTGGGAAGAAAATTCATGGGTCTGCTACAAAAGTTGGGCTCTCTTCGACTTTG 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 ATTGTCATTGGGAGGAAAATTCATGGGTCTGCTACAAAAGTTGGGCTCTCTTCGACTTTG 525
Query 241 TTTGTTGGGAATGGTTTAGTTTCTATGTATGGAAAGTGTGGATTTTTATCTGAAGCAAGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TTTGTTGGGAATGGTTTAGTTTCTATGTATGGAAAGTGTGGATTTTTATCTGAAGCAAGG 585
Query 301 CTTGTACTTGATGAGATGTCTAGGAGAGATGTGGTCTCTTGGAACTCGTTAGTTGCTGGG 360
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||
Sbjct 586 CTTGTACTTGACGAGATGTCTAGGAGAGATGTGGTGTCTTGGAACTCGTTGGTTGTTGGG 645
Query 361 TATGCGCAAAATCAGAGATTTGATGATGCTTTGGAAGTTTGTAGGGAAATGGAATCTGTG 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 646 TATGCGCAAAATCAGAGATTTGATGATGCTTTGGAGGTTTGTAGGGAAATGGAGTCTGTG 705
Query 421 AAGATAAGCCACGATGCTGGCACCATGGCTAGTCTGTTACCAGCAGTGAGTAACACTACA 480
||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 706 AAGATAAGCCATGATGCTGGTACGATGGCTAGTCTGTTACCAGCAGTGAGTAACACTACA 765
Query 481 ACTGAAAACGTTATGTATGTTAAAGATATGTTTTTTAAAATGGGGAAAAAGAGTTTGGTT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 ACTGAAAACGTTATGTATGTTAAAGATATGTTTTTTAAAATGGGGAAAAAGAGTTTGGTT 825
Query 541 TCATGGAATGTGATGATCGGTGTGTATATGAAAAACGCGATGCCTGTTGAAGCCGTGGAG 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 826 TCATGGAATGTGATGATCGGTGTGTATATGAAAAATGCGATGCCTGTTGAAGCTGTGGAA 885
Query 601 TTGTATTCCGGAATGGAGGCTGATGGGTTCGAACCTGATGCAGTCTCGATCACAAGTGTG 660
||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 886 TTGTATTCCCGAATGGAGGCTGATGGGTTTGAACCTGATGCAGTCTCAATCACAAGTGTA 945
Query 661 TTACCTGCTTGTGGAGATACATCTGCTCTGTCTCTTGGTAAGAAAATCCATGGATACATT 720
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 946 TTACCTGCTTGTGGAGATACCTCTGCTCTGTCTCTTGGTAAGAAAATCCATGGATACATT 1005
Query 721 GAGAGAAAGAAGCTGATACCGAATCTGTTGTTAGAGAATGCACTGATTGATATGTATGCG 780
||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 1006 GAGAGGAAGAAGCTGATACCAAATCTGTTGTTAGAGAATGCACTGATCGACATGTATGCA 1065
Query 781 AAATGCGGATGTTTAGACAGAGCGAGAGATGTGTTTGAGAACATGAAGTCACGTGATGTT 840
||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1066 AAATGCGGATGTTTAGAGAAAGCTAGAGATGTGTTTGAGAACATGAAGTCACGTGATGTT 1125
Query 841 GTGTCTTGGACAGCTATGATTTCAGCTTATGGATTCAGCGGAAGAGGCTGTGACGCAGTG 900
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1126 GTGTCTTGGACAGCTATGATTTCAGCTTATGGATTCAGCGGACGAGGCTGTGACGCAGTG 1185
Query 901 GCATTGTTTTCGAAAATGCAAGATTCGGGTCTCGTCCCTGATTCAATTGCGTTTGTCACA 960
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 GCATTGTTTTCGAAATTGCAAGATTCGGGTCTCGTCCCTGATTCAATTGCGTTTGTCACA 1245
Query 961 ACGCTCGCTGCTTGTAGCCACGCAGGATTACTAGAAGAAGGTAGGAGTTGTTTCAAACTC 1020
||||| |||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 1246 ACGCTTGCTGCTTGTAGCCATGCGGGGTTACTAGAAGAAGGTAGGAGTTGTTTCAAACTC 1305
Query 1021 ATGACAGATCATTACAAGATCACTCCTAGGTTAGAGCATTTGGCTTGTATGGTGGATCTT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 ATGACAGATCATTACAAGATCACTCCTAGGTTAGAGCATTTGGCTTGTATGGTGGATCTT 1365
Query 1081 CTTGGCCGAGCCGGGAAAATGAAAGAAGCTTACAAATTCATACAAGA-ATGTCAATGGAA 1139
|||||||||||||||||| ||||||||||||||| ||| |||||||| ||||||||||||
Sbjct 1366 CTTGGCCGAGCCGGGAAAGTGAAAGAAGCTTACAGATTTATACAAGATATGTCAATGGAA 1425
Query 1140 CCAAACGAGAGAGTTTGGGGAGC 1162
|||||||||||||||||||||||
Sbjct 1426 CCAAACGAGAGAGTTTGGGGAGC 1448
Score = 385 bits (208), Expect = 1e-105
Identities = 223/230 (97%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 1191 GCAATCGGGTTACTACGTATTGCTTTCTAACATATACGCAAAGGCTGGAAGATGGGAAGA 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530 GCAATCGGGTTACTACGTATTGCTTTCTAACATATACGCAAAGGCTGGAAGATGGGAAGA 1589
Query 1251 AGAGACTAACATCAGAAACATAATGAAGAGCAAAGGGTTGAAGAAGAATCCCGGAGCAAG 1310
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1590 AGTGACTAACATCAGAAACATAATGAAGAGCAAAGGGTTAAAGAAGAATCCCGGAGCAAG 1649
Query 1311 CAATGTTGAGGTGAACAGAGA-AATTCATACATTCTTAGTAGGCGACAGGTCACACCCGC 1369
|||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1650 CAATGTTGAGGTCAACAGA-ATAATTCATACATTCTTAGTAGGCGACAGGTCACACCCGC 1708
Query 1370 AATCCAATGAGATTTACAGAGAGCTGGATGTTCTAGTAAAGAAAATGAAA 1419
||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1709 AATCCGATGAGATATACAGAGAGCTGGATGTTCTAGTAAAGAAAATGAAA 1758
> AT3G49140.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:18211863-18215619 REVERSE LENGTH=1886
Length=1886
Score = 811 bits (439), Expect = 0.0
Identities = 557/612 (91%), Gaps = 15/612 (2%)
Strand=Plus/Plus
Query 1759 GAGGTTGCTTCAGATGATCTTGTTGATTGGATGGATCAGCCGTCTGCTGGCCTTGCTATC 1818
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 918 GAGGTTGCTTCAAATGATCCTGTTGATTGGATGGATCAGCCGTCTGCTGGCCTTGCTATC 977
Query 1819 CAGGGAATTCTGAGTCATATCTTAGTGGAAGATTATTCAGATATCCAAAGGAAACTTGCT 1878
|||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 978 CAGGGACTTTTGAGTCATATCTTAGTGGAAGATTATTCAGATATCCAAAAGAAACTTGCT 1037
Query 1879 GATAACAATTCTACAAGTACGAACAGAAACAAGGATGCAGAAAACTTAGAAGAAAAGCTT 1938
|||| ||||||||| | || ||| |||||||||||||||||||||||| || ||||||
Sbjct 1038 GATAGCAATTCTAC-A--ACTAACGGAAACAAGGATGCAGAAAACTTAGTGGACAAGCTT 1094
Query 1939 GCAGACATTAGTAAGGCATGTGGTGAAGAATCTGACATAGATTCATCGCAGGGTGAAAAA 1998
| ||||| |||||||||| ||||||| |||||||| ||||||||||| |||| |||||||
Sbjct 1095 GAAGACAATAGTAAGGCAGGTGGTGACGAATCTGAGATAGATTCATCACAGGATGAAAAA 1154
Query 1999 GAAAGAACTGTGGTGGCATTTTACAAGCTGGAGATGATAAGAATTCAGCTTATTACA-C- 2056
| ||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1155 GCAAGAAATGTGGTGGCGTTTTACAAGCTGGAGATGATAAGAATTCAGCTTATCACAGCA 1214
Query 2057 C-A---CA--AG-CTG--G-AGAGGTGGAAGATGTCAGAAAAGCACAACCTGATGTTATT 2106
| | | || ||| | |||||||||||||||||||||||||||||||||| ||||
Sbjct 1215 CAAGGGGATCAGACTGAAGTTGAGGTGGAAGATGTCAGAAAAGCACAACCTGATGCTATT 1274
Query 2107 GCTCATGCATCAGCTGGAATCATAAGCCGTTTAGAAGAATCTGGTGATAAAGTAACTGAA 2166
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1275 GCTCATGCATCAGCTGAAATCATAAGCCGTTTAGAAGAATCTGGTGATAAAATAACTGAA 1334
Query 2167 GCCCTCAAATCTCTGTGTTGGAGACATAATGGTATTCAAGCAGAGGAAGTGAAGCTGATT 2226
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1335 GCACTCAAATCTCTGTGTTGGAGACATAACAGTATTCAAGCAGAGGAAGTGAAGCTGATT 1394
Query 2227 GGGGTAGATTCCCTAGGTTTTGACCTCAGGCTTTGCGCAGGAGCAAAAATTGAGTCATTT 2286
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1395 GGGATAGATTCCCTAGGTTTTGACCTCAGGCTTTGCGCAGGAGCAAAGATTGAGTCATTG 1454
Query 2287 CGGTTTGCATTCTTGACAAGGGCAACATCAGAAGACAATGCAGAGGGACGAATAAGAGAG 2346
|| |||||||||| ||||||||||||||||||||| || |||||||||| ||||||| |
Sbjct 1455 CGATTTGCATTCTCGACAAGGGCAACATCAGAAGAAAACGCAGAGGGACAAATAAGAAAA 1514
Query 2347 CTATTATTCCCG 2358
||||||||||||
Sbjct 1515 CTATTATTCCCG 1526
Score = 241 bits (130), Expect = 3e-62
Identities = 138/142 (97%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 1621 CAAGTTATAGTAGGTTTTGATACGATGGAGATGATCAAGGAAATGGAGCTGATGGGTCTT 1680
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 615 CAAGTTATAGTTGGTTTTGATACGATGGAGATGATCAAGGAAATGGAGCTGATGGGACTT 674
Query 1681 TCTGATAGTGACTTTGAAACTGAAGATGATGAAAGTGGAGAAGATGACAGTGAGGATACA 1740
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 675 TCTGATAGTGACTTTGAAACTGAAGATGATGAAAGTGGAGATGATGACAGTGAGGATACA 734
Query 1741 GGAGAAGACGAATATGAGGAGG 1762
|||||||||||| |||||||||
Sbjct 735 GGAGAAGACGAAGATGAGGAGG 756
> AT5G24060.2 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:8129979-8133301 REVERSE LENGTH=1811
Length=1811
Score = 86.1 bits (46), Expect = 1e-15
Identities = 50/52 (96%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 1621 CAAGTTATAGTAGGTTTTGATACGATGGAGATGATCAAGGAAATGGAGCTGA 1672
||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 570 CAAGTAATAGTAGGTTTTGATACGATGGAGATGATCAAGGACATGGAGCTGA 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117218272575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5