BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897770

Length=993
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G49150.1 | Symbols:  | F-box/RNI-like superfamily protein | ...   268    6e-71


> AT3G49150.1 | Symbols:  | F-box/RNI-like superfamily protein 
| chr3:18218858-18221918 FORWARD LENGTH=1934
Length=1934

 Score =  268 bits (145),  Expect = 6e-71
 Identities = 399/514 (78%), Gaps = 47/514 (9%)
 Strand=Plus/Plus

Query  1     ATGGCCTTGAGACGCACTTTATCCCTCAGATCCTTGTTCAATGCTCGCTGCTACCAACCA  60
             |||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct  1348  ATGGACTTGAGACGCACTTTGTCTCTCAGATCCTTATTCAATGCTCGCTGCTACCAACCA  1407

Query  61    TCCTATAGCGGTATCATTCTTCATGATAATGTTCATGAAAAGAAGCCAAATTACGGCTCT  120
             || | ||||||||||||||  | |||| |||| |||||| |||||||| |||||||||||
Sbjct  1408  TCTTGTAGCGGTATCATTCAACGTGATGATGTCCATGAAGAGAAGCCACATTACGGCTCT  1467

Query  121   TTGCTTCATCAGAGATCCTTTAGCAGCTC---CATTCTCTCT---CAGCA-A--CTCAGA  171
             || ||||||||||||||||| ||||| ||    |||||||||   ||||| |   | |||
Sbjct  1468  TTTCTTCATCAGAGATCCTTCAGCAGTTCGATGATTCTCTCTCAGCAGCATATGATGAGA  1527

Query  172   AGCTCTTCTTCACATTTGTCTCTATGCACTCCTTTTGGTGTCTCTATCCATCATC-GCTC  230
             ||| |  ||||||||||  | |||||| |||||||||||||||||| || | ||| || |
Sbjct  1528  AGC-C--CTTCACATTTCCCACTATGCTCTCCTTTTGGTGTCTCTA-CC-T-ATCGGC-C  1580

Query  231   TATGTCGACTTCTCATGTTCCAGGCTCAGATGATTCTTGCAATGT-AAGTGAAGTTGCAG  289
             |||||||||||| ||| || |||||||||||||   | || |||| || | | ||||| |
Sbjct  1581  TATGTCGACTTCACATATTTCAGGCTCAGATGAGAGTGGCGATGTGAA-TCATGTTGCTG  1639

Query  290   GAACTCCGA-TAGATTCGGTG-ATGGAAAAT-GTGGCTTCCCA---G--GAT--TG--GT  337
              |||||  | | ||||  ||| | | || ||   | | ||  |   |  |||  ||   |
Sbjct  1640  AAACTCTTACT-GATTTAGTGCA-GCAAGATACAGTCATCGAAGTTGCCGATGCTGCTAT  1697

Query  338   C-A-TACT-CATACAATTTCGACATTGTTAAGGCA-TTAATTGA-AACACTGCACTC-TT  391
             | | | || ||| ||| || ||  ||||| | |||  || || | ||   |||| ||  |
Sbjct  1698  CGATTCCTCCATCCAA-TTAGATTTTGTTCA-GCAGATAGTTCATAA-TGTGCATTCACT  1754

Query  392   ACACAGGCTTAAACTGGTGGGCTTCCATTGTTCTTGCCACCCTTT-TGATTCGAGGAGTT  450
              ||||||||||||||||||||||||||||||| || ||||| ||| | ||||||||||| 
Sbjct  1755  -CACAGGCTTAAACTGGTGGGCTTCCATTGTTTTTACCACC-TTTCTAATTCGAGGAGTG  1812

Query  451   ACAATTCCGCTCATGATTGA-TAACGAAAGATGG  483
             ||||| || ||||||||||| |  ||||||||||
Sbjct  1813  ACAATCCCTCTCATGATTGAATG-CGAAAGATGG  1845



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 48626654296


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5