BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897788
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49320.1 | Symbols: | Metal-dependent protein hydrolase | c... 1679 0.0
> AT3G49320.1 | Symbols: | Metal-dependent protein hydrolase |
chr3:18288247-18290672 REVERSE LENGTH=1242
Length=1242
Score = 1679 bits (909), Expect = 0.0
Identities = 1009/1059 (95%), Gaps = 0/1059 (0%)
Strand=Plus/Plus
Query 1 ATGTTTGTGTCAAGAGGTCTCTGTTGCAGCAGAATCTGGAATCGTTCTCTGTTTCTCAAA 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 44 ATGTTTGGGTCAAGAGGTCTCTGTTGCAGCAGAATCTGGAATCGTTCTCTGTTTCTCAAA 103
Query 61 CGTTATTCAAACTTCCGAGCTAGTTTCTCGACCAAACGTATTGGGACGCACAATGGAACT 120
|||| |||||||||||||||||||||||| || |||||| ||||||| || ||||||||
Sbjct 104 CGTTCTTCAAACTTCCGAGCTAGTTTCTCTACGAAACGTGTTGGGACCCATAATGGAACA 163
Query 121 TTCCACTGCGACGAAGCCTTAGCTTGCTTCATCCTTCGTCGTTCCAGTAGATTCTCCGAT 180
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 164 TTCCACTGCGACGAAGCTTTAGCTTGCTTCATCCTTCGTCGTTCCAATAGATTCTCCGAT 223
Query 181 GCTCAAATCATACGAACCAGAGATCATCAGGTTTTGGAGAAGCTTGATGCGGCACTTGAT 240
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 GCTCAAATCGTCCGAACCAGAGATCATCAGGTTTTGGAGAAGCTTGATGCGGCACTTGAT 283
Query 241 GTTGGAGGTGTGTATGATCCTCAGAGTGAACGTTATGACCATCACCAGAAAGGCTTTAGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 284 GTTGGAGGTGTGTATGATCCTCAGAGTGAACGTTATGACCATCACCAGAAAGGATTTAGT 343
Query 301 GAAGTGTTTGGCCTTGGGTTCAATACTAAACTCAGTAGTGCTGGGCTTGTCTATAAGCAT 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 344 GAAGTGTTTGGCCTTGGGTTTAATACTAAACTCAGTAGTGCTGGGCTTGTCTATAAGCAT 403
Query 361 TATGGATTGGAGATAATTTCTAAGGAGCTTCAACTTGATCAGAGACATCCCGATGTGTTT 420
||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 404 TATGGATTGGAAATAATTTCCAAGGAGCTTCAACTTGAGCAGAGACATCCTGATGTGTTT 463
Query 421 CGATTGTTTCTAGCTGTGTACAAGAACTTCATCGAGGCAGTAGATGCTATAGACAATGGC 480
||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||
Sbjct 464 CGATTGTTTCTAGCTGTGTACAAAAACTTCATTGAGGCAGTAGATGCTTTAGACAATGGT 523
Query 481 ATCCATCAGTATGATACTGACCAGCCTCCAAGATATGTAAACAATACTAGCCTGGGGCAT 540
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 524 ATCCATCAATATGATACTGACCAACCTCCAAGATATGTAAACAATACTAGCCTGGGGCAT 583
Query 541 AGGATTGGAAGGTTAAACCTAGACTGGATTGAGCCTGATCAGTCTAGTGAAAAAGAAGAC 600
||||||||||| || ||| ||||||||||||| |||||||||||||||| ||||||||
Sbjct 584 AGGATTGGAAGATTGAACTTAGACTGGATTGAACCTGATCAGTCTAGTGCCAAAGAAGAT 643
Query 601 GAAGCCTTTCATCGGGCAATGGAACTTGCTGGCTCTGAGTTTTTGGAGTGTGTTCATTTT 660
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 644 GAAGCCTTTCATCGGGCAATGGAGCTTGCTGGCTCTGAGTTCTTGGAGTGTGTTCATTTT 703
Query 661 CACGCGAAATCGTGGTTACCAGCTCGATTAATTGTTATGGAATGCCTTGCAAAACGGTAT 720
|||||||||||||||||||||||||| | |||||||||||| || |||||||||||||||
Sbjct 704 CACGCGAAATCGTGGTTACCAGCTCGGTCAATTGTTATGGAGTGTCTTGCAAAACGGTAT 763
Query 721 GATATAGACTCCAGTGGAGAAATTATGAAGCTCAGTAAACAATGCCCATGGAAACTCCAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 GATATAGACTCCAGTGGAGAAATTATGAAGCTCAGTAAACAATGCCCATGGAAACTCCAT 823
Query 781 ATATTCGAGCTCGAGGAAGAAATGAAGATTGATCCTCCCATAAAATATGTTCTTTACCAG 840
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 824 ATATTCGAGCTCGAGGAAGAAATGAAGATTGATCCTCCAATAAAATATGTTCTTTACCAG 883
Query 841 GATGATAGAAGCGAAAACTGGAGAATCCAAGCAGTTTCAGTTTCACCAGAGAGGTTTGAG 900
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 884 GATGATAGAAGCGAAAACTGGAGAATACAAGCAGTTTCGGTTTCACCAGAGAGGTTTGAG 943
Query 901 AGCCGTAAAGCTTTGCCATTATCATGGAGAGGTCTAGAAATGGAGAAGCTCTCAGAGGAA 960
|||||||||||||| |||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct 944 AGCCGTAAAGCTTTACCATTAGCATGGAGAGGTTTAGAAAAGGAGAAGCTCTCAGAGGAA 1003
Query 961 AGTTCAATCCCAGGCTGTGTTTTTGTGCATATGAGTGGTTTCATTGGTGCAAACCGAACC 1020
|| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1004 AGCTCAATTCCACGCTGTGTTTTTGTGCATATGAGTGGTTTCATTGGTGCAAACCAAACC 1063
Query 1021 TATGAAGGTGCCTTGGCAATGGCAAGAGCCTCTTTGATG 1059
|||||||||||||| |||||||||||||| |||||||||
Sbjct 1064 TATGAAGGTGCCTTAGCAATGGCAAGAGCTTCTTTGATG 1102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5