BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897832
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60960.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1005 0.0
AT5G28340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 569 1e-161
AT5G28380.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 569 1e-161
> AT3G60960.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:22535706-22538635 FORWARD LENGTH=1513
Length=1513
Score = 1005 bits (544), Expect = 0.0
Identities = 731/818 (89%), Gaps = 26/818 (3%)
Strand=Plus/Plus
Query 262 CACACTGCAACCAATGTCACGTCGACGACGCTCTTGAGCTCTACCGCCACATTTTGCTCG 321
|||||||| ||||| ||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 421 CACACTGCGACCAAGGTCACGTCGACGATGCTCTTGAGCTCTACCGTCACATTTTGCTCG 480
Query 322 ACGGAC-----G-T-------T-------TACATGTTACTCACGAAAGCCTTGGTTGATG 361
|||||| | | | |||||| ||||| ||||||||||||||||||
Sbjct 481 ACGGACGTGTAGCTCCAGGGATCGAGACATACATGATACTCGCGAAAGCCTTGGTTGATG 540
Query 362 CTGAAAGATTCGACGAAGCTTGTGATTTAGTGAGTTCCATGAGCTCTTGTAGTTTCATGG 421
|| |||||||||| |||||||||| ||| | ||| |||||||||| ||||||||||||||
Sbjct 541 CTAAAAGATTCGATGAAGCTTGTGTTTTGGCGAGATCCATGAGCTGTTGTAGTTTCATGG 600
Query 422 TCTACGACATTTTAATCCGCGGGTTCTTGGATGTAGGGAATTTCGTAAAGGCTAGCCAAA 481
||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 TCTACGACATTCTAATTCGCGGGTTCTTGGATATAGGGAATTTCGTAAAGGCTAGCCAAA 660
Query 482 TCTTCGAGGAACTGAAAGGACTGGATAGTAAACTTCCAGGGAGAGAATATCACACGGCAA 541
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 TCTTCGAGGAATTGAAAGGACTGGATAGTAAACTTCCAGGGAGAGAATATCACAAGGCAA 720
Query 542 TTGCAATCTTTAATGTTTCGTTTATGAACTATTTTTTCAATCAAGGCAAAGATGAGGAAG 601
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 721 ATGCAATCTTTAATGTTTCGTTTATGAACTATTGGTTCAAGCAAGGCAAAGATGAGGAAG 780
Query 602 CTATGGAGATTCTCGCAACTCTGGAAGAGGCTCAAGTGTTGAAACCCATTGTCGGAAACA 661
|||||||||||||||||| ||||||||| ||||||||| |||| ||||||||||||||||
Sbjct 781 CTATGGAGATTCTCGCAAATCTGGAAGATGCTCAAGTGCTGAACCCCATTGTCGGAAACA 840
Query 662 GGGTTTTGGATGTTCTTGTCTGGCACGGTAAGGATACAGAGGCCTGGGAATTGTTTGAAG 721
|||||||| | ||||| || ||||||||| | |||||||||||||||||||||| ||
Sbjct 841 GGGTTTTGCAAGTTCTGGTGAAGCACGGTAAAAAAACAGAGGCCTGGGAATTGTTTGGAG 900
Query 722 AGATGATAGAAATCTGTGATTCCGAGAC-GATTGACATAATGTCCGACTATTTTAGTGAA 780
||||||||||||| |||||||||||||| | |||||||||||||||| |||||||||||
Sbjct 901 AGATGATAGAAATTTGTGATTCCGAGACTG-TTGACATAATGTCCGAGTATTTTAGTGAG 959
Query 781 AAGACTGTGCCATTCGAGCGGCTTAGGAAAACGTGTTATAGGAATATGATCGTGAGTCTC 840
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 960 AAGACTGTACCATTCGAGCGGCTTAGGAAAACGTGTTATAGGAAGATGATCGTGAGTCTC 1019
Query 841 TGCGAGCATGAAAAAGTATCAGACGCAGAGAAACTCTTCGCCGAGATGTTTACTGACGTT 900
|||||||||| |||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 1020 TGCGAGCATGGAAAAGTGTCAGACGCAGAGAAACTCTTCGCCGAGATGTTTACCGATGTT 1079
Query 901 GACGTAGAGGACTTGTTCGTGGGGCCTGACGTCTTAACATTCAGAGCAATGATCAATGGT 960
|||| || ||||||||| |||||||||||| | |||| ||||||||||||||||||||||
Sbjct 1080 GACGGAGGGGACTTGTTGGTGGGGCCTGACCTTTTAATATTCAGAGCAATGATCAATGGT 1139
Query 961 TACGTTA-AGGTAGGGAGATTCGATGATGCTATCATGACCTTGAACAAGATGCGAGTTTT 1019
|| ||| || |||||||| | ||||||||||||| |||||||||||||||||| | |||
Sbjct 1140 TATGTTTCAG-TAGGGAGAGTGGATGATGCTATCAAGACCTTGAACAAGATGCG-GATTT 1197
Query 1020 -ATATATCAGAAAGCTTGCTATTCATCATGCACCATAA 1056
| || |||||||||||||||||||||| || ||||||
Sbjct 1198 CAAATCTCAGAAAGCTTGCTATTCATCAAGCCCCATAA 1235
> AT5G28340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:10314118-10317160 FORWARD LENGTH=1308
Length=1308
Score = 569 bits (308), Expect = 1e-161
Identities = 678/845 (80%), Gaps = 71/845 (8%)
Strand=Plus/Plus
Query 262 CACACTGCAACCAATGTCA-CGTCGACGACGCTCTTGAGCTCTACCGCCACATTTTGCTC 320
|||||||| ||||| | || ||||||| ||||||||||||||||||||||||||||||||
Sbjct 485 CACACTGCGACCAA-GGCAGCGTCGACCACGCTCTTGAGCTCTACCGCCACATTTTGCTC 543
Query 321 GACGG-ACGTTTA-C---ATG--T-------TAC----T-C--ACGAAAGCCTTGGTTGA 359
||||| | ||||| | | | | ||| | | |||||||||||||| |
Sbjct 544 GACGGGA-GTTTAGCTCCAGGGATCGAGACGTACAGGATACTGACGAAAGCCTTGGTCGG 602
Query 360 TGCTGAAAGATTCGACGAAGCTTGTGATTTAGTGAGTTCCATGAGCT-CT-TGTAGTTTC 417
|||| ||||||| || |||||||||||| ||||||| ||||||||| || || | ||||
Sbjct 603 TGCTAAAAGATTAGATGAAGCTTGTGATGTAGTGAGATCCATGAGCCGCTGTG-A-TTTC 660
Query 418 ATGGTCTACGACATTTTAATCCGCGGGTT-CTTGGATGTAGGGAATTTCGTAAAGGCTAG 476
|| ||||||||| | || || ||||| || |||| ||| || ||||||| ||||||
Sbjct 661 GCCGTATACGACATTCTGATTCGAGGGTTTCT-GGATAAAGGCAAATTCGTAAGGGCTAG 719
Query 477 CCAAATCTTCGAGGAACTGAAAGGACTGGATAGTAAACTTCCAGGGAGAGAA-TATCACA 535
|||||||||||||||| ||||||||| | |||||||||||||| || || || |||||||
Sbjct 720 CCAAATCTTCGAGGAATTGAAAGGACCGAATAGTAAACTTCCATGGCGA-AACTATCACA 778
Query 536 CGGCAATTGCAATCTTTAATGTTTCGTTTATGAACTATTTTTTCAATCAAGGCAAAGATG 595
||| ||||||||||| || |||||||||||| |||| | ||||| ||||||||||| |
Sbjct 779 AGGCGATTGCAATCTTCAACGTTTCGTTTATGGACTACTGGTTCAAGCAAGGCAAAGACG 838
Query 596 AGGAAGCTATGGAGATTCTCGCAACTCTGGAAGAGGCTCAAGTGTTGAA-ACCCATTGTC 654
|||| |||||||||||| |||||||||| ||| | ||| || || | || ||| ||| ||
Sbjct 839 AGGAGGCTATGGAGATTTTCGCAACTCTCGAACATGCTGAATTGCTCAACACC-ATT-TC 896
Query 655 -GGAAACAGG-GTTTTGGA-TGTTCTTGTCTG-GCACGGTAAGGATA-CAGAGGCCTGGG 709
|||||| || |||||| | || ||||| | |||||||| ||| | ||||||||||||
Sbjct 897 CGGAAAC-GGAGTTTTGAAATGC-CTTGTG-GAGCACGGTA-GGAAAACAGAGGCCTGGG 952
Query 710 AATTGTT-TGAAGAGATGATAGAAATCTGTGATTCCGAGACGATTGACATAAT---GTCC 765
||||||| | | || ||||||||||||||||||||||||||| ||| |||||| ||||
Sbjct 953 AATTGTTCTTA-GATATGATAGAAATCTGTGATTCCGAGACGGTTGGCATAATAATGTCC 1011
Query 766 --G-AC--TATTTTAGT-GAAAAGACTGTGCCATTCGAGCG-GCTTAGGAA-AACGTGTT 817
| | | |||| | ||||||||| | || || ||||| | | || || ||||||||
Sbjct 1012 AAGGAGGGTTTTTTCGGCGAAAAGACTATCCCGTTTGAGCGAG-TGAG-AAGAACGTGTT 1069
Query 818 ATAGGAATATGATCGTGAGTCTCTGCGAGCATGAAAA-A-GTATCAGACGCAGAGAAACT 875
||| | ||||||| |||||||||| | || | ||| | || | || |||||||||||
Sbjct 1070 ATACCAGGATGATCGCGAGTCTCTGCCAACAAGGAAACATGT-TG-GAGGCAGAGAAACT 1127
Query 876 CTTCGCCGAGATGTTTACTGACGTTGACG-TAGAGGACTTGTTCGTGGGGCCTGACGTCT 934
||| ||||| |||||| | |||||||||| | || |||||||| | || ||||| || |
Sbjct 1128 CTTTGCCGACATGTTTGCCGACGTTGACGGT-GATGACTTGTTGGCAGGACCTGATGT-T 1185
Query 935 T-AACATTCAGAGCAATGATCAATGGTTACGTTAAGGTAGGGAGATTCGATGATGCTATC 993
| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1186 TCAACATTCAGAGCAATGATCAATGGTTATGTTAAGGTAGGGAGAGTCGATGATGCTATC 1245
Query 994 ATGACCTTGAACAAGATGCGAGTTTTATA-TATCAGAAAGCTTGCTATTCATCATGC-AC 1051
| |||||||||||||||| || ||| || | ||||||||||| |||||||||| || ||
Sbjct 1246 AAGACCTTGAACAAGATGA-AGATTTCTAATCTCAGAAAGCTTTCTATTCATCAAGCCAC 1304
Query 1052 CATAA 1056
||||
Sbjct 1305 -ATAA 1308
> AT5G28380.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:10338723-10341007 REVERSE LENGTH=1173
Length=1173
Score = 569 bits (308), Expect = 1e-161
Identities = 678/845 (80%), Gaps = 71/845 (8%)
Strand=Plus/Plus
Query 262 CACACTGCAACCAATGTCA-CGTCGACGACGCTCTTGAGCTCTACCGCCACATTTTGCTC 320
|||||||| ||||| | || ||||||| ||||||||||||||||||||||||||||||||
Sbjct 350 CACACTGCGACCAA-GGCAGCGTCGACCACGCTCTTGAGCTCTACCGCCACATTTTGCTC 408
Query 321 GACGG-ACGTTTA-C---ATG--T-------TAC----T-C--ACGAAAGCCTTGGTTGA 359
||||| | ||||| | | | | ||| | | |||||||||||||| |
Sbjct 409 GACGGGA-GTTTAGCTCCAGGGATCGAGACGTACAGGATACTGACGAAAGCCTTGGTCGG 467
Query 360 TGCTGAAAGATTCGACGAAGCTTGTGATTTAGTGAGTTCCATGAGCT-CT-TGTAGTTTC 417
|||| ||||||| || |||||||||||| ||||||| ||||||||| || || | ||||
Sbjct 468 TGCTAAAAGATTAGATGAAGCTTGTGATGTAGTGAGATCCATGAGCCGCTGTG-A-TTTC 525
Query 418 ATGGTCTACGACATTTTAATCCGCGGGTT-CTTGGATGTAGGGAATTTCGTAAAGGCTAG 476
|| ||||||||| | || || ||||| || |||| ||| || ||||||| ||||||
Sbjct 526 GCCGTATACGACATTCTGATTCGAGGGTTTCT-GGATAAAGGCAAATTCGTAAGGGCTAG 584
Query 477 CCAAATCTTCGAGGAACTGAAAGGACTGGATAGTAAACTTCCAGGGAGAGAA-TATCACA 535
|||||||||||||||| ||||||||| | |||||||||||||| || || || |||||||
Sbjct 585 CCAAATCTTCGAGGAATTGAAAGGACCGAATAGTAAACTTCCATGGCGA-AACTATCACA 643
Query 536 CGGCAATTGCAATCTTTAATGTTTCGTTTATGAACTATTTTTTCAATCAAGGCAAAGATG 595
||| ||||||||||| || |||||||||||| |||| | ||||| ||||||||||| |
Sbjct 644 AGGCGATTGCAATCTTCAACGTTTCGTTTATGGACTACTGGTTCAAGCAAGGCAAAGACG 703
Query 596 AGGAAGCTATGGAGATTCTCGCAACTCTGGAAGAGGCTCAAGTGTTGAA-ACCCATTGTC 654
|||| |||||||||||| |||||||||| ||| | ||| || || | || ||| ||| ||
Sbjct 704 AGGAGGCTATGGAGATTTTCGCAACTCTCGAACATGCTGAATTGCTCAACACC-ATT-TC 761
Query 655 -GGAAACAGG-GTTTTGGA-TGTTCTTGTCTG-GCACGGTAAGGATA-CAGAGGCCTGGG 709
|||||| || |||||| | || ||||| | |||||||| ||| | ||||||||||||
Sbjct 762 CGGAAAC-GGAGTTTTGAAATGC-CTTGTG-GAGCACGGTA-GGAAAACAGAGGCCTGGG 817
Query 710 AATTGTT-TGAAGAGATGATAGAAATCTGTGATTCCGAGACGATTGACATAAT---GTCC 765
||||||| | | || ||||||||||||||||||||||||||| ||| |||||| ||||
Sbjct 818 AATTGTTCTTA-GATATGATAGAAATCTGTGATTCCGAGACGGTTGGCATAATAATGTCC 876
Query 766 --G-AC--TATTTTAGT-GAAAAGACTGTGCCATTCGAGCG-GCTTAGGAA-AACGTGTT 817
| | | |||| | ||||||||| | || || ||||| | | || || ||||||||
Sbjct 877 AAGGAGGGTTTTTTCGGCGAAAAGACTATCCCGTTTGAGCGAG-TGAG-AAGAACGTGTT 934
Query 818 ATAGGAATATGATCGTGAGTCTCTGCGAGCATGAAAA-A-GTATCAGACGCAGAGAAACT 875
||| | ||||||| |||||||||| | || | ||| | || | || |||||||||||
Sbjct 935 ATACCAGGATGATCGCGAGTCTCTGCCAACAAGGAAACATGT-TG-GAGGCAGAGAAACT 992
Query 876 CTTCGCCGAGATGTTTACTGACGTTGACG-TAGAGGACTTGTTCGTGGGGCCTGACGTCT 934
||| ||||| |||||| | |||||||||| | || |||||||| | || ||||| || |
Sbjct 993 CTTTGCCGACATGTTTGCCGACGTTGACGGT-GATGACTTGTTGGCAGGACCTGATGT-T 1050
Query 935 T-AACATTCAGAGCAATGATCAATGGTTACGTTAAGGTAGGGAGATTCGATGATGCTATC 993
| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1051 TCAACATTCAGAGCAATGATCAATGGTTATGTTAAGGTAGGGAGAGTCGATGATGCTATC 1110
Query 994 ATGACCTTGAACAAGATGCGAGTTTTATA-TATCAGAAAGCTTGCTATTCATCATGC-AC 1051
| |||||||||||||||| || ||| || | ||||||||||| |||||||||| || ||
Sbjct 1111 AAGACCTTGAACAAGATGA-AGATTTCTAATCTCAGAAAGCTTTCTATTCATCAAGCCAC 1169
Query 1052 CATAA 1056
||||
Sbjct 1170 -ATAA 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5