BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897833
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62060.1 | Symbols: | Pectinacetylesterase family protein |... 1343 0.0
AT2G46930.1 | Symbols: | Pectinacetylesterase family protein |... 732 0.0
> AT3G62060.1 | Symbols: | Pectinacetylesterase family protein
| chr3:22979955-22982944 FORWARD LENGTH=1638
Length=1638
Score = 1343 bits (727), Expect = 0.0
Identities = 800/836 (96%), Gaps = 2/836 (0%)
Strand=Plus/Plus
Query 22 AGAGATACTGAGACTGCGATATCTTTTCTGGAGTATAAATTGATGGCGCCTTCGGTTCCA 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 AGAGATACTGAGACTGCGATATCTTTTCTGGAGTATAAATTGATGGCGCCTTCGGTTCCA 327
Query 82 ATGGTGCCTCTCACTTTGATTGAGGGAGCTGACTCTAAAGGAGCTGTGTGCTTAGATGGG 141
||| | |||||||| |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 328 ATGATACCTCTCACCTTGATTCACGGAGCTGACTCTAAAGGAGCTGTGTGCTTAGATGGG 387
Query 142 ACGCTACCTGGTTATCATTTAGATCGTGGTTTTGGATCAGGTGCTAACAGTTGGCCTATC 201
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 388 ACGCTACCTGGTTATCATCTAGATCGTGGTTTTGGATCAGGTGCTAACAGTTGGCTTATC 447
Query 202 CACCTTGAGGGTGGAGGATGGTGTAACAACCATAGGAGCTGTGTATATCGCAAAACAAGT 261
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 448 CAGCTTGAGGGTGGAGGATGGTGTAACAACCATAGGAGCTGTGTGTATCGCAAAACAAGT 507
Query 262 CCG-CGTGGTTCTTCTAAGTTCATGGAAAAAGCTTTGCCCTTCACTGGAATATTGAGCAA 320
|| |||||||| ||||| |||||||||||||||||| ||||||||||||| ||||||||
Sbjct 508 -CGACGTGGTTCCTCTAAATTCATGGAAAAAGCTTTGGCCTTCACTGGAATTTTGAGCAA 566
Query 321 TAAACCTGAAGAGAATCCTGACTTCTTTCATTGGAACAGGATCAAGTTGCGCTACTGTGA 380
|| | ||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||
Sbjct 567 TAGATCTGAAGAGAATCCTGACTTCTTTAATTGGAACAGGATCAAGTTGCGTTACTGCGA 626
Query 381 TGGTGCGTCTTTCTCTGGTGATAGTCAGGACGAGAGTTCGCAAATTTTCTATCGAGGACA 440
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 627 TGGTGCGTCTTTCTCTGGTGATAGTCAGGACGAGAGTTCGCAACTTTTCTATCGAGGACA 686
Query 441 ACGAATCTGGCAAATGGCTATGGAAGAATTCCTGTCTTTAGGCATGAAGCAAGCAAACCA 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 ACGAATCTGGCAAGTGGCTATGGAAGAATTCCTGTCTTTAGGCATGAAGCAAGCAAACCA 746
Query 501 GGCTCTGCTTTCTGGATGTTCAGCTGGAGGATTAGCTTCCATCTTGCACTGTGATGAGTA 560
||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 747 GGCTCTGCTCTCTGGATGTTCAGCTGGAGGATTAGCTTCTATTTTGCACTGTGATGAGTT 806
Query 561 CATGGAACTATTACCTAGTTCCAGGAAAGTAAAATGCTTAAGTGACGCTGGAATGTTTCT 620
|| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 807 CAGGGAACTATTACCTAGTTCCACGAAAGTAAAATGCTTAAGTGATGCTGGAATGTTTCT 866
Query 621 TGACGCAGTGGATGTCTCTGGGGGCCACTCGCTTAGGAATATGTTCCAAGGTGTTGTTAC 680
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 GGACTCAGTGGATGTCTCTGGGGGCCACTCGCTTAGGAATATGTTCCAAGGTGTTGTTAC 926
Query 681 AGTGCAGAACCTCCAAAAGGACTTGTCCAGTACTTGTACAAACCATTTGGATCCTACTTC 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 AGTGCAGAACCTCCAAAAGGACTTGTCCAGTACTTGTACAAACCATTTGGATCCTACTTC 986
Query 741 GTGCTTCTTTCCTCAGAACTTGGTTTCAGACATCAAAACCCCAATGTTTCTTCTCAACAC 800
|||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 987 GTGCTTTTTTCCCCAGAACTTGGTTTCAGACATTAAAACCCCAATGTTTCTTCTCAACAC 1046
Query 801 AGCATATGACTCGTGGCAGATCCAAGAGAGCTTAGCTCCTCCAACTGCTGATCCAG 856
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1047 AGCATATGACTCTTGGCAGATCCAAGAGAGCTTAGCTCCTCCTACTGCTGATCCAG 1102
> AT2G46930.1 | Symbols: | Pectinacetylesterase family protein
| chr2:19283519-19286347 FORWARD LENGTH=1614
Length=1614
Score = 732 bits (396), Expect = 0.0
Identities = 653/775 (84%), Gaps = 26/775 (3%)
Strand=Plus/Plus
Query 82 ATGGTGCCTCTCACTTTGATTGAGGGAGCTGACTCTAAAGGAGCTGTGTGCTTAGATGGG 141
||||||||||||||||||||| ||| |||| ||| ||||||||||||||| | |||||
Sbjct 260 ATGGTGCCTCTCACTTTGATTCAGGCTGCTGCCTCCAAAGGAGCTGTGTGCCTGGATGGA 319
Query 142 ACGCTACCTGGTTATCATTTAGATCGTGGTTTTGGATCAGGTGCTAACAGTTGGCCT-AT 200
|| ||||||||||||||| || | | ||||| ||||||||| |||||| | ||| || ||
Sbjct 320 ACACTACCTGGTTATCATCTACACCCTGGTTCTGGATCAGGAGCTAACCGGTGG-CTCAT 378
Query 201 CCACCTTGAGGGTGGAGGATGGTGTAACAAC-CATAGGAGCTGTGTATAT-CGCAAAACA 258
||| || ||||||||||||||||| ||| || | |||||||||| | | | || |||||
Sbjct 379 CCAACTCGAGGGTGGAGGATGGTGCAAC-ACACGTAGGAGCTGTATCT-TCCGGAAAACC 436
Query 259 AGTCCG-CGTGGTTCTTCTAAGTTC--ATGGAAAAAGCTTTGCCCTTCACTGGAATATTG 315
| | || |||||||| || || || ||||| |||| |||| |||||||||||||||||
Sbjct 437 ACT-CGCCGTGGTTCATC-AA-ATCATATGGAGAAAGTTTTGGCCTTCACTGGAATATTG 493
Query 316 AGCAATAAACCTGAA-GAGAATCCTGACTTCTTTC-ATTGGAACAGGA-TCAAGTTGCGC 372
||||||||| || || ||||||||||||||| ||| | ||||||| || |||| |||||
Sbjct 494 AGCAATAAATCT-AATGAGAATCCTGACTTC-TTCAACTGGAACA-GAGTCAAATTGCGT 550
Query 373 TACTGTGATGGTGCGTCTTTCTCTGGTGATAGTCAGGACGAGAGTTCGCAAATTTTCTAT 432
||||| |||||||| |||||| | || ||||||||||| ||||| || ||| ||| ||||
Sbjct 551 TACTGCGATGGTGCCTCTTTCACCGGCGATAGTCAGGATGAGAGCTCACAACTTTACTAT 610
Query 433 CGAGGACAACGAATCTGGCAAAT-GGCTATGGAAGAATTCCTGTCTTTAGGCATG-AAGC 490
|||||||||||||||||| | | |||||||||||| | || ||| ||||||| ||
Sbjct 611 AGAGGACAACGAATCTGGC-ATTCAGCTATGGAAGAACTACTCTCTAAAGGCATGCAA-A 668
Query 491 AAGCA-AACCAGGCTCTGCTTTCTGGATGTTCAGCTGGAGGATTAGCTTCCATCTTGCAC 549
||||| || |||||||| |||||||||||||||||||| ||||||||||||||| | |||
Sbjct 669 AAGCAGAA-CAGGCTCTACTTTCTGGATGTTCAGCTGGGGGATTAGCTTCCATCCTACAC 727
Query 550 TGTGATGAGTACATGGAACTATTACCTAGTTCCAGGAAAGTAAAATGCTTAAGTGACGCT 609
|| ||| ||| || ||||||||| || | | | || ||| |||||||||||||| |||
Sbjct 728 TGCGATCAGTTCAAGGAACTATTTCCGGGCACTACGACAGTGAAATGCTTAAGTGATGCT 787
Query 610 GGAATGTTTCTTGACGCAGTGGATGTCTCTGGGGGCCACTCGCTTAGGAATATGTTCCAA 669
||||||||| | || ||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 788 GGAATGTTTATGGATGCAGTGGATGTCTCTGGGGGCCACTCGCTCCGGAAAATGTTCCAA 847
Query 670 GGTGTTGTTACAGTGCAGAACCTCCAAAAGGA-CTTGTCCAGTACTTGTACAAACCATTT 728
|||||||||||||| ||||||||||||||||| || ||||| | |||||||||| |||||
Sbjct 848 GGTGTTGTTACAGTACAGAACCTCCAAAAGGAACT-GTCCACTGCTTGTACAAAGCATTT 906
Query 729 GGATCCTACTTCGTGCTTCTTTCCTCAGAACTTGGTTTCAGACATCAAAACCCCAATGTT 788
|||||| ||||||||||||||||| |||||||||||||||| ||| || || ||||||||
Sbjct 907 GGATCCAACTTCGTGCTTCTTTCCCCAGAACTTGGTTTCAGGCATTAAGACTCCAATGTT 966
Query 789 TCTTCTCAACACAGCATATGACTCGTGGCAGATCCAAGAGAGCTTAGCTCCTCCA 843
||||||||| ||||||||||| | |||||| | |||||||| |||||||| |||
Sbjct 967 TCTTCTCAATGCAGCATATGACGCTTGGCAGGTACAAGAGAGTTTAGCTCCACCA 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42749259097
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5