BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897836
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62100.1 | Symbols: IAA30 | indole-3-acetic acid inducible 3... 291 4e-78
AT2G46990.1 | Symbols: IAA20 | indole-3-acetic acid inducible 2... 152 2e-36
> AT3G62100.1 | Symbols: IAA30 | indole-3-acetic acid inducible
30 | chr3:22995791-22996761 FORWARD LENGTH=731
Length=731
Score = 291 bits (157), Expect = 4e-78
Identities = 167/172 (97%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 1 ATGATGATCATGGAAGAAGAAGATCAAAACGAGTGTAATAGTGTCGGAAGCTTCTACGTG 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 ATGATGATCATGGAAGAAGAAGAGCAAAACGAGTGTAATAGTGTCGGAAGCTTCTACGTG 299
Query 61 AAAGTGAACATGGAAGGAGTTCCTATTGGAAGAAAGATCGATCTTTTATCTCTTAATGGA 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 300 AAAGTGAACATGGAAGGAGTTCCTATTGGGAGAAAGATCGATCTTTTATCTCTTAATGGA 359
Query 121 TACCATGATTTGATCACAACTCTTGACTACATGTTCAATGCCTCAATCCTTT 172
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 360 TATCATGATTTGATCACAACTCTCGACTACATGTTCAATGCTTCAATCCTTT 411
Score = 171 bits (92), Expect = 5e-42
Identities = 96/98 (98%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 239 GGGCTGAAGAAGAAGAGATGTGTAGTGAGAAGAGTCACGTGCTAACGTACGCAGACAAAG 298
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 GGGCTGAAGAAGAAGATATGTGTAGTGAGAAGAGTCACGTGCTAACGTACGCAGACAAAG 471
Query 299 AAGGTGACTGGATGATGGTTGGAGATGTTCCATGGGAG 336
||||||||||||||||||||||||||||||| ||||||
Sbjct 472 AAGGTGACTGGATGATGGTTGGAGATGTTCCTTGGGAG 509
> AT2G46990.1 | Symbols: IAA20 | indole-3-acetic acid inducible
20 | chr2:19307855-19308990 FORWARD LENGTH=655
Length=655
Score = 152 bits (82), Expect = 2e-36
Identities = 126/148 (85%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 11 TGGAAGAAGAAGATCAAAACGAGTGTAATAGTGTCGGAAGCTTCTACGTGAAAGTGAACA 70
|||| || ||||| | || |||||||| ||||| || ||||| ||||||||||||||||
Sbjct 218 TGGAGGAGGAAGAAGAGAATGAGTGTAACAGTGTAGGGAGCTTTTACGTGAAAGTGAACA 277
Query 71 TGGAAGGAGTTCCTATTGGAAGAAAGATCGATCTTTTATCTCTTAATGGATACCATGATT 130
||||||||||||| |||||||||||||||||||| | ||||||||||| |||| || |
Sbjct 278 TGGAAGGAGTTCCAATTGGAAGAAAGATCGATCTAATGTCTCTTAATGGCTACCGCGACT 337
Query 131 TGATCACAACTCTTGACTACATGTTCAA 158
|||||| ||| ||||| | |||||||||
Sbjct 338 TGATCAGAACCCTTGATTTCATGTTCAA 365
Score = 148 bits (80), Expect = 2e-35
Identities = 92/98 (94%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 239 GGGCTGAAGAAGAAGAGATGTGTAGTGAGAAGAGTCACGTGCTAACGTACGCAGACAAAG 298
|||||||||||||||| ||||| | |||||||||||||||||||||||||||||| || |
Sbjct 380 GGGCTGAAGAAGAAGACATGTGCAATGAGAAGAGTCACGTGCTAACGTACGCAGATAAGG 439
Query 299 AAGGTGACTGGATGATGGTTGGAGATGTTCCATGGGAG 336
||||||||||||||||||||||||||||||| ||||||
Sbjct 440 AAGGTGACTGGATGATGGTTGGAGATGTTCCTTGGGAG 477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15834340935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5