BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897839
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1271 0.0
> AT3G60980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:22565309-22566745 REVERSE LENGTH=1437
Length=1437
Score = 1271 bits (688), Expect = 0.0
Identities = 1076/1256 (86%), Gaps = 55/1256 (4%)
Strand=Plus/Plus
Query 1 ATGTCTCAGATCTGCCGCCTCAATCTTCTTGGTCGGCGTTTCTTCGCCGCCATGCCAAGC 60
||||||| |||| |||||||||| |||||||||||| |||| | ||||| |||||||
Sbjct 68 ATGTCTCTGATCGGCCGCCTCAA---TCTTGGTCGGCGCTTCTGCACCGCCGTGCCAAGA 124
Query 61 AGA-CCGAAGGAGATAATGTCAAACCCAGATTGCCGTCCC-GC-GCAGCTATGCTTGAGA 117
||| | ||| || ||||||||||||||||||||||| ||| | | | |||||||||||
Sbjct 125 AGATCGGAA-GACATAATGTCAAACCCAGATTGCCG-CCCTTCTG-ATCTATGCTTGAGG 181
Query 118 GTCACGTACTTGATCAGATTCGTTGGTGATCTCGACACGGCGGCGAAGTACGCTCGTTTG 177
||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 182 GTCTCGTACTTGATCAGATGCGTTGGGGATCTCGACACGGCGGCGAAGTACGCTCGTTTG 241
Query 178 GCTGTTTTCACCAGCATCAAATCGGAGGCCACAGCAGCAACATGTCAAGCCATCATCGGA 237
||||||||||||||||||||||||||| | ||| || ||| ||||||| |||||||||||
Sbjct 242 GCTGTTTTCACCAGCATCAAATCGGAGTCAACAACAACAATATGTCAATCCATCATCGGA 301
Query 238 GGCATGTTGCAGAATAAAAGGCACGATGACGCTTACGATCTCTACGATTTCTTCTTCAAT 297
|||||||| | | ||||||||| | | |||||||| ||||||||||| ||||||||||||
Sbjct 302 GGCATGTTACGGGATAAAAGGCTCAAGGACGCTTATGATCTCTACGAGTTCTTCTTCAAT 361
Query 298 CA-CTTTAAGCTCAGACCCAACAGCCATTGCTGTAACTACATCATCGAATCTCGTTTCAA 356
|| | | || ||||||||||||||||||||||| |||||||||||||||||| ||||| |
Sbjct 362 CAGCAT-AACCTCAGACCCAACAGCCATTGCTGGAACTACATCATCGAATCTGGTTTCCA 420
Query 357 ACAAGGT-TTAGTTGACGAAGCTCT-CGGTTTCCACAACCGATCCATCGAAT-CTGGT-A 412
||||||| || || |||| ||||| | ||||||| |||||| |||| ||| | ||| |
Sbjct 421 ACAAGGTCTT-GTCAACGATGCTCTGCA-TTTCCACCACCGATGCATC-AATTCCGGTCA 477
Query 413 TGGTCCACGACTACCCAAGCCAGGATACTTTTAGGGTCTTGACTAAATGGTTAGTCCACG 472
||||||||||||||||||| | ||| |||| ||| ||||||||||| |||||||||||
Sbjct 478 -GGTCCACGACTACCCAAGCGACGATTCTTTCAGGATCTTGACTAAAGGGTTAGTCCACT 536
Query 473 CCGGTCGAATGGACCAAGCGGAAGCCTTGCTTAGAGACAGGACAGTCGGTAGGACCACCT 532
||||||| |||||||||| |||||||| ||||||| |||||||||| | | |||||||
Sbjct 537 CCGGTCGGTTGGACCAAGCCGAAGCCTTTCTTAGAGGCAGGACAGTCAATCGAACCACCT 596
Query 533 ACCCAGATCACGTGGCGTACAAGAATCTGATTCGTGGGTTTTTGGATCTTGGGGATTT-A 591
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |
Sbjct 597 ACCCAGATCACGTGGCGTACAACAATCTGATTCGCGGGTTTTTGGATCTTGGAAATTTTA 656
Query 592 GACAAGGCGGATCTAGTCTTGGCCGAATTCAAACGCTTATTTTCT-ATTGCCCTATCCGA 650
| |||||| |||||||||||| ||||||||||||||| |||| | ||||||||||||||
Sbjct 657 AA-AAGGCGAATCTAGTCTTGGGCGAATTCAAACGCTTGTTTT-TGATTGCCCTATCCGA 714
Query 651 GACCAAAGATGATT--CA--A---A--CTATGAAAACAGAGTCGCATTTCTGATGGCCAC 701
|||||||||||||| || | | ||||||||||||||||||||| |||||||||||
Sbjct 715 GACCAAAGATGATTTGCACCATTCAAACTATGAAAACAGAGTCGCATTCCTGATGGCCAC 774
Query 702 GTTCATGGAGTACTGGTTTAAGCAAGGTAAAGAGGTGGAAGCTATGGAGTGTTACAACCT 761
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 775 ATTCATGGAGTACTGGTTTAAGCAAGGTAAACAGGTGGAAGCTATGGAGTGTTACAACCG 834
Query 762 TTGTGTTATAGCAAACAAGTTACCGGTTTGCACAGAAACTGGCAACGCCCTTTTGAAAGT 821
|||||| || |||||| ||||| |||||| | ||||| || |||||||||||||||||
Sbjct 835 CTGTGTTCTATCAAACAGGTTACTGGTTTGTGCCGAAACGGGTAACGCCCTTTTGAAAGT 894
Query 822 CCTGCTCAAATACGGTGAGAAAAAACATGCTTGGGCTTTGTACCATGAACTCTTAGATAA 881
|||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct 895 CCTGCTCAAATACGGTGAAAAAAAAAATGCTTGGGCATTGTACCATGAACTCTTAGATAA 954
Query 882 A---GGTA--G--AA------CA-G-ACCCTGATACCATTAAGATAATGATAGACGAGTG 926
| || | | || | | || |||||||||||||||||||| | ||||||||
Sbjct 955 AAATGGAACCGGTAAGGGTTGCTTGGACTCTGATACCATTAAGATAATGGTGGACGAGTG 1014
Query 927 TTTTGATATGGGTCGATTTAGCGAGGCT-TGGGAGACCTACAACAAGGCTAGTGCCAAGA 985
|||||||||||| | ||||| |||||| ||| |||||||||| ||||| || ||||||
Sbjct 1015 CTTTGATATGGGTTGGTTTAGTGAGGCTATGG-AGACCTACAAAAAGGCGAGACCCAAGA 1073
Query 986 ACCACTTCCTCAGTGACAGATACATTATTACAAGGTTTTGCCAAAACGGGATGTTATCAG 1045
|| ||| ||||||||||| |||||||||||||||||||||| ||||| ||||||| ||||
Sbjct 1074 ACGACTACCTCAGTGACAAATACATTATTACAAGGTTTTGCGAAAACAGGATGTTGTCAG 1133
Query 1046 AAGCACAGT-TAGTCTTT-TACGATTCACTTGAAGATGATTTAGGCTACATTGATGTTAA 1103
||||| ||| | || ||| | |||||||||| |||||||| || || |||||||||||
Sbjct 1134 AAGCAGAGTCT-GTTTTTGTT-GATTCACTTGCTGATGATTTTGGATATATTGATGTTAA 1191
Query 1104 CATTTTTAAAACACTGATTGATGCTTTTGTCAAGGATGGGTTCCC-CGATGATGCTATCA 1162
|| || ||||||| |||| ||||||| ||| |||| |||| | |||||||||| |
Sbjct 1192 CACTTATAAAACAATGATCGATGCTTATGTGAAGGCTGGGAGAATAC-ATGATGCTATAA 1250
Query 1163 AAATCTCCAACAAGATGATCGATTCAACTCTAAAGGAGGTCTCCCATCTCGTTTGA 1218
||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1251 AAACCTCCAACAAGATGATCGATGCAACTCTAAAGGAGGTCTCCCATCTCTTTTGA 1306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5