BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897842
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49690.1 | Symbols: RAX3, MYB84, ATMYB84 | myb domain protei... 1402 0.0
AT5G65790.1 | Symbols: ATMYB68, MYB68 | myb domain protein 68 |... 532 2e-150
> AT3G49690.1 | Symbols: RAX3, MYB84, ATMYB84 | myb domain protein
84 | chr3:18427735-18429201 FORWARD LENGTH=1240
Length=1240
Score = 1402 bits (759), Expect = 0.0
Identities = 880/936 (94%), Gaps = 18/936 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAGAGCACCGTGTTGTGACAAAGCAAACGTGAAGAAAGGGCCTTGGTCTCCTGAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 ATGGGAAGAGCACCGTGTTGTGACAAAGCAAACGTGAAGAAAGGGCCTTGGTCTCCTGAG 266
Query 61 GAAGATGCAAAACTCAAATCTTACATTGAAAAGAGTGGAACAGGAGGCAATTGGATCGCT 120
|||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 267 GAAGATGCAAAACTCAAATCTTACATTGAAAATAGTGGCACCGGAGGCAATTGGATCGCT 326
Query 121 TTGCCTCAGAAGATTGGTTTAAAGAGATGTGGGAAGAGTTGCAGGCTGAGGTGGCTTAAC 180
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 327 TTGCCTCAAAAGATTGGTTTAAAGAGATGTGGAAAGAGTTGCAGGCTGAGGTGGCTTAAC 386
Query 181 TATCTGAGACCAAACATCAAACATGGTGGCTTCTCTGAGGAAGAAGAAAACATCATTTGT 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 TATCTTAGACCAAACATCAAACATGGTGGCTTCTCTGAGGAAGAAGAAAACATCATTTGT 446
Query 241 AGCCTCTATCTTACTATTGGTAGCAGGTGGTCTATAATCGCTGCTCAATTGCCGGGACGA 300
||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 AGCCTTTACCTTACAATTGGTAGCAGGTGGTCTATAATCGCTGCTCAATTGCCGGGACGA 506
Query 301 ACAGACAACGATATAAAAAACTATTGGAACACTAGGCTCAAGAAGAAACTTATTAACAAA 360
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 507 ACAGACAACGATATAAAAAACTATTGGAACACGAGGCTCAAGAAGAAACTCATTAACAAA 566
Query 361 CAACGCAAGGAGCTCCAAGAAGCTTGTATGGAGCAGCAAGAGATGATGGTGATGATGAAG 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 CAACGCAAGGAGCTTCAAGAAGCTTGTATGGAGCAGCAAGAGATGATGGTGATGATGAAG 626
Query 421 AGacaacaacaacaacaacaaATCCAAACTTCTTTCATGATGAGACAAGACCAAACAATG 480
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 627 AGACAACACCAACAACAACAAATCCAAACTTCTTTTATGATGAGACAAGACCAAACAATG 686
Query 481 TTCACATGGCCACTACAACATCATCATGATCAGGTACCAACACTTTTCATGGATAAAACC 540
||||||||||||||||| |||||| ||| ||| || ||| | ||||||||| || |||||
Sbjct 687 TTCACATGGCCACTACATCATCATAATGTTCAAGTTCCAGCTCTTTTCATGAATCAAACC 746
Query 541 AACTCGTTTTGCGACCAAGAAGATGCTAAGCCAGTG---ATCAAGATC--G---AAGATC 592
||||||||||||||||||||||||| |||||||||| ||||||| | | ||||||
Sbjct 747 AACTCGTTTTGCGACCAAGAAGATGTTAAGCCAGTGCTCATCAAGAACATGGTCAAGATC 806
Query 593 -A-G-----GAACTGGAGAGAACAAACCCTCATCATCATCAAGATTCGATGACAAACGCT 645
| | |||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 807 GAAGATCAAGAACTGGAGAAAACAAACCCTCATCATCATCAAGATTCAATGACAAACGCT 866
Query 646 TTTGATCATCTCTCTTTCTCTCAACTCTTGTTAGATCCTAATCATAACCACTTAGGATCA 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 TTTGATCATCTCTCTTTCTCTCAACTCTTGTTAGATCCTAATCATAACCACTTAGGATCA 926
Query 706 GGAGAGGGTTTCTCCATGACCTCGATCTTGAGCGCCAACGCAAACCCTCCATTGCTTAAC 765
|| |||||||||||||||| ||| ||||||||||||||| ||||| |||||||||||||
Sbjct 927 GGCGAGGGTTTCTCCATGAACTCTATCTTGAGCGCCAACACAAACTCTCCATTGCTTAAT 986
Query 766 ACAAGTATTAATGATCATCAGTGGTTCGGGAATTTCCAGGCCGAAACCATCAACTTGTTC 825
||||||| | |||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 987 ACAAGTA--A-TGATAATCAGTGGTTCGGGAATTTCCAGGCCGAAACCGTAAACTTGTTC 1043
Query 826 TCAGGAGCCTCCACAAGTACTTCGGCAGATCAAAGCACCATAAGTTGGGAAGACATAAGC 885
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1044 TCAGGAGCCTCCACAAGTACTTCGGCAGATCAAAGCACTATAAGTTGGGAAGACATAAGC 1103
Query 886 TCTCTTGTTTATTCTGATTCAAAGCAATTTTGTTAA 921
||||||||||||||||||||||||||||||| ||||
Sbjct 1104 TCTCTTGTTTATTCTGATTCAAAGCAATTTTTTTAA 1139
> AT5G65790.1 | Symbols: ATMYB68, MYB68 | myb domain protein 68
| chr5:26322948-26324578 FORWARD LENGTH=1405
Length=1405
Score = 532 bits (288), Expect = 2e-150
Identities = 385/432 (89%), Gaps = 6/432 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGAGCACCGTGTTGTGACAAAGCAAACGTGAAGAAAGGGCCTTGGTCTCCTGAG 60
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 88 ATGGGAAGAGCACCGTGTTGTGATAAGGCCAACGTGAAGAAAGGGCCTTGGTCTCCTGAG 147
Query 61 GAAGATGCAAAACTCAAATCTTACATTGAAAAGAGTGGAACAGGAGGCAATTGGATCGCT 120
||||| || ||||||||| |||||| || || ||||| ||||||||||| ||||| |||
Sbjct 148 GAAGACGCCAAACTCAAAGATTACATCGAGAATAGTGGCACAGGAGGCAACTGGATTGCT 207
Query 121 TTGCCTCAGAAGATTGGTTTAAAGAGATGTGGGAAGAGTTGCAGGCTGAGGTGGCTTAAC 180
||||||||||| |||||||||| |||||||||||||||||||||||| |||||||| |||
Sbjct 208 TTGCCTCAGAAAATTGGTTTAAGGAGATGTGGGAAGAGTTGCAGGCTAAGGTGGCTCAAC 267
Query 181 TATCTGAGACCAAACATCAAACATGGTGGCTTCTCTGAGGAAGAAGAAAACATCATTTGT 240
||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 268 TATTTGAGACCAAACATCAAACATGGTGGCTTCTCCGAGGAAGAAGACAACATCATTTGT 327
Query 241 AGCCTCTATCTTACTATTGGTAGCAGGTGGTCTATAATCGCTGCTCAATTGCCGGGACGA 300
| ||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| ||
Sbjct 328 AACCTCTATGTTACTATTGGTAGCAGGTGGTCTATAATTGCTGCACAATTGCCGGGAAGA 387
Query 301 ACAGACAACGATATAAAAAACTATTGGAACACTAGGCTCAAGAAGAAACTTATTAACAAA 360
|| ||||||||||| ||||||||||||||||| ||||| |||||||| ||| | ||||||
Sbjct 388 ACCGACAACGATATCAAAAACTATTGGAACACGAGGCTGAAGAAGAAGCTTCTGAACAAA 447
Query 361 CAACGCAAGGAGCTCCAAGAAGCTTGTATGGAGCAGCAAGAGATGATGGTGATGATGAAG 420
||| | || ||| |||||||||| | ||| | ||||||||||| | ||||||||||
Sbjct 448 CAAAGGAAAGAGTTCCAAGAAGCGCGAATG-A--AGCAAGAGATG--G-TGATGATGAAA 501
Query 421 AGacaacaacaa 432
|| |||||||||
Sbjct 502 AGGCAACAACAA 513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5