BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897864
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49820.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 436 6e-122
AT5G65925.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 99.0 3e-20
> AT3G49820.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G65925.1);
Has 23 Blast hits to 23 proteins in 7 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18481237-18481722
FORWARD LENGTH=486
Length=486
Score = 436 bits (236), Expect = 6e-122
Identities = 385/451 (85%), Gaps = 33/451 (7%)
Strand=Plus/Plus
Query 1 ATGAAAGGGAAAGGCATAGAGAAAGACAACTGCTTCGTATGGTTGGTTAAGGCTCCTTTT 60
||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAGCGAAAGTCATAGAGAAAGAGAACTGCTTCGTATGGTTGGTTAAGGCTCCTTTT 60
Query 61 CGTTTCTTGATCATGGCACGTGACGCCTATATACGTAGCATTACGTCATGCTCCCGCGCC 120
||| | ||||||||||||||||||||||| ||||| |||||||||||||||||| |||||
Sbjct 61 CGTCTGTTGATCATGGCACGTGACGCCTACATACGAAGCATTACGTCATGCTCCGGCGCC 120
Query 121 GGAATCC-TTACCGGTGGTGGATCCTCCGGTTTTGGTCAGCGCTCCGGAAACTTCCAAAT 179
||||| || ||||||||||||| || ||||||||||| | ||||||||||||||||||
Sbjct 121 GGAATTTATT-CCGGTGGTGGATCATCTGGTTTTGGTCAACTCTCCGGAAACTTCCAAAT 179
Query 180 ATGTGATCCGCCTAGCACCGTCCTTCCCCGGAGCTTTACCTTGACGTCAACGGCACATGT 239
|| |||||||||||||||| |||||| || ||||||||||||||||| |||||||||
Sbjct 180 CTGCGATCCGCCTAGCACCGCCCTTCCTCGAAGCTTTACCTTGACGTCGGCGGCACATGA 239
Query 240 TCAAGA--GT-TGGCAA-TGA-G-ACAA--T-C-ATTG---T----C-------GT--T- 272
||||| || || || || | |||| | | |||| | | || |
Sbjct 240 TCAAGGCTGTCTGACACGTGGCGGACAACCTACGATTGCAATGAGACAATCATTGTCCTT 299
Query 273 GGATCATCGGAGGAACTATAGATGCGTTGTTGTGATGGGAAGAATCGATGAGGAGATTTC 332
||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 300 GGATCATCGGAAGAACAATAGATGCGTTGTTGTGATGGGAAGAATAGATGAGGAGATGTC 359
Query 333 TTGTGATGATGATGA-G--TTTCAAGAAGAAGACTCTTTTCTTGATTATGGTAAATGCGA 389
||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 TTGTGATGATGATGATGAGTTTCAAGAAGAAGACTCTTTTCTTGATTATGGTAATTGCGA 419
Query 390 GATTTTTACaaaaaaaaaTAGAAAAACCATC 420
|||| |||||||| ||| |||||||||||||
Sbjct 420 GATTCTTACAAAAGAAA-TAGAAAAACCATC 449
> AT5G65925.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G49820.1);
Has 45 Blast hits to 45 proteins in 6 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:26369045-26369751
FORWARD LENGTH=707
Length=707
Score = 99.0 bits (53), Expect = 3e-20
Identities = 144/186 (77%), Gaps = 14/186 (8%)
Strand=Plus/Plus
Query 41 GGTTGGTTAAGGCTCCTTTTCGTTTCTTGATCATGGCACGTGACGCCTATATACGTAGCA 100
||||||| || |||| |||||||||||||||||||||||||||| || ||||||||||
Sbjct 118 GGTTGGTGAAATCTCCGGTTCGTTTCTTGATCATGGCACGTGACGCTTACATACGTAGCA 177
Query 101 TTACGTCATGCTCCCGCGCCGGAATCCTTAC-CGGTGGTGGATC-CTCCGG---TTTTGG 155
| |||||||||||| || | || || | | ||||||||| | |||||| ||||||
Sbjct 178 TGACGTCATGCTCC-GC-C-GGTTTCATC-CGCGGTGGTGG-TGGCTCCGGCGCTTTTGG 232
Query 156 -TCAGCGCTCCGGAAACTTCCAAATATGTGATCCGCCTAGCACCGTCCTTCCC-CGGAGC 213
| | | | |||| || |||||||| || || | || | |||||| || ||| || |||
Sbjct 233 CTTACCAC-CCGGTAATTTCCAAATCTGCGAAGCACCAACCACCGTTCT-CCCTCGTAGC 290
Query 214 TTTACC 219
|| |||
Sbjct 291 TTCACC 296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20207635098
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5