BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897870
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49890.1 | Symbols: | unknown protein; Has 27 Blast hits to... 937 0.0
> AT3G49890.1 | Symbols: | unknown protein; Has 27 Blast hits
to 27 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa
- 3; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes
- 3 (source: NCBI BLink). | chr3:18499170-18500722 FORWARD
LENGTH=1010
Length=1010
Score = 937 bits (507), Expect = 0.0
Identities = 613/665 (92%), Gaps = 4/665 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGATCGAGAGAGAAGTGGAGGAGATAGCAGCAGTGAAGATGAAGATCCCAAGTGG 60
|||||| | || ||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 127 ATGGCTAAACGGGAGTTAAGTGGAGGAGATAGCAGCAGCGAAGATGAAGATCCCAAGTGG 186
Query 61 AAAGCTGCAATCAATTCGATAGCCACCACCACCGTTTACGGCGCCTCCGCCACGAAACCC 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 AGAGCTGCAATCAATTCGATAGCCACCACCACCGTTTACGGCGCCTCCGCCACGAAACCC 246
Query 121 GCAGCTACTAAG-CTACGTGAAG-ATGGAGATTTTAGAATCAAACCTAAAAAGCTAACAC 178
||||||||| || | || | || ||||||||||| | ||||||||||||| |||||||
Sbjct 247 GCAGCTACTCAGTC-ACAT-AACTATGGAGATTTTCGTCTCAAACCTAAAAAACTAACAC 304
Query 179 ATGGGCAGATCAAGGTGAAGAACCTTTTGAATGAAATGGTGGAGAAGACTTTAGACTTTG 238
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 305 ATGGGCAAATCAAGGTGAAGAATCTTTTGAATGAAATGGTGGAGAAGACTTTAGACTTTG 364
Query 239 TTAAAGATCCTGTCAATGTTCCCGAGGATAAACCAGAGAATGATTGTGGAGTTCGTTTAT 298
|| |||||||||||||| |||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct 365 TTGAAGATCCTGTCAATATTCCTGAGGATAAACCCGAGAATGACTGTGGAGTTCGGTTAT 424
Query 299 TTAAGCGGTGTGCAACTGGCATAATCTTTGATCATGTAGATGAGATTAAAGGACCCAAAA 358
||||||||||||| |||||||| | |||||||||||||||||||||| |||||| ||||
Sbjct 425 TTAAGCGGTGTGCTACTGGCATTGTATTTGATCATGTAGATGAGATTAGAGGACCTAAAA 484
Query 359 GGAAGCCTAATTTACGCCCTGACAGAGGAGCCCAAGTAAACTCTAAAGAGTTTAAGAAAC 418
||||||||||||||||||||||| ||||| ||| || ||||||||||||||||||||
Sbjct 485 AGAAGCCTAATTTACGCCCTGACAAAGGAGTTGAAGGAAGCTCTAAAGAGTTTAAGAAAC 544
Query 419 GAATAAAATCAATTGCTGTTGATGGGTCGGATATTTTAACTGCTGCTACGGAAGCGGCCA 478
|| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
Sbjct 545 GAGTAAAATCAATTGCTGTTGATGGTTCGGATATTTTAACTGCTGCTGTGGAAGCGGCGA 604
Query 479 AGAAAGCCTCGGCTAGAATAGAGGCGAAAGAAGCGGCAGCAAAAGCTAAAGCTAAGAAAG 538
||||||||||||||||| |||| |||||||||| |||||| |||| ||||||||||||||
Sbjct 605 AGAAAGCCTCGGCTAGATTAGATGCGAAAGAAGTGGCAGCGAAAGATAAAGCTAAGAAAG 664
Query 539 AGGAAGAGAGAATCGCAGAATTGAAGAAAGTAAGAGGTGAAAAATGGTTACCTTCTATTG 598
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 665 AGGAAGAGAGAATCGCAGAGTTGAAGAAAGTAAGAGGAGAAAAATGGTTACCTTCTATTG 724
Query 599 AAAGGGCAATGAAAAAGGAAATGAAGCGTATCAAACATACGGCATGGAAGTCTGCAATGT 658
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 725 AAAGGGCAATGAAAAAGGAAATGAAGCGTATCAAACATACCGCATGGAAGTCTGCAATGT 784
Query 659 CGTGA 663
|||||
Sbjct 785 CGTGA 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32049385786
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5