BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897877
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49960.1 | Symbols: | Peroxidase superfamily protein | chr3... 1591 0.0
> AT3G49960.1 | Symbols: | Peroxidase superfamily protein | chr3:18524084-18525687
REVERSE LENGTH=1296
Length=1296
Score = 1591 bits (861), Expect = 0.0
Identities = 947/990 (96%), Gaps = 0/990 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCGCTTCGGCATTGTTCTAGTCATATCTCTTTGCCTCACAATCTCTGTCTTGCCC 60
||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||| |||
Sbjct 78 ATGGCTCGCTTCGATATTGTTCTACTCATAGGTCTTTGCCTCATAATCTCTGTCTTTCCC 137
Query 61 GATACAACCATCGCGCAGCTAAGCCGCGGTTTCTACTCCAAAACTTGCCCCAATGTCGAA 120
|||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 GATACAACCACCGCACAACTAAGCCGCGGTTTCTACTCCAAAACTTGCCCCAATGTCGAA 197
Query 121 CAAATCGTGAGAAATGCTGTCCAAAAGAAAATAAAGCAGACGTTCGTCACCGCCCCTGCC 180
|||||||||||||||||||||||||||||||||||| |||| |||||| ||| |||||||
Sbjct 198 CAAATCGTGAGAAATGCTGTCCAAAAGAAAATAAAGAAGACATTCGTCGCCGTCCCTGCC 257
Query 181 ACTCTCCGTCTCTTCTTCCACGACTGCTTTGTCAATGGTTGTGATGCATCTGTCATGATC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 ACTCTCCGTCTCTTCTTCCACGACTGCTTTGTCAATGGTTGTGATGCATCTGTCATGATC 317
Query 241 CAATCAACGCCTACGAACAAGGCAGAGAGGGATCATCCAGATAACATTTCGCTGGCCGGA 300
||||||||||||| |||||||||||||| |||||||||||||||||||||||| || |||
Sbjct 318 CAATCAACGCCTAAGAACAAGGCAGAGAAGGATCATCCAGATAACATTTCGCTAGCTGGA 377
Query 301 GATGGATTTGACGTGGTGATCCAAGCTAAGAAAGCCCTTGACGCTAACCCTCGTTGCCAA 360
||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 378 GATGGATTTGATGTGGTGATCCAAGCTAAGAAAGCCCTTGACTCTAACCCTAGTTGCCGG 437
Query 361 AACAAGGTCTCATGTGCCGATATTCTTACTTTGGCCACCCGAGATGTCGTTGTTGCGGCT 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 438 AACAAGGTCTCATGTGCCGATATTCTTACTTTGGCCACCCGAGATGTTGTTGTTGCGGCT 497
Query 421 GGAGGACCTTCCTATGAAGTTGAACTTGGTAGGTTCGATGGTTTGGTATCAACCGCGTCT 480
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 GGAGGACCGTCCTATGAAGTTGAACTTGGTAGGTTCGATGGTTTGGTATCAACCGCGTCA 557
Query 481 AGTGTCGAAGGGAACTTACCAGGACCTTCGGACAATGTAGACAAACTTAACGCTCTTTTC 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 558 AGTGTCGAAGGGAACTTACCAGGACCTTCGGACAATGTAGACAAACTTAATGCTCTTTTC 617
Query 541 AAGAAAAACAAACTTACCCAAGAAGATATGATTGCTCTTTCAGCGGCTCACACCCTTGGA 600
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 ACGAAAAACAAACTTACCCAAGAAGATATGATTGCTCTTTCAGCGGCTCACACCCTTGGA 677
Query 601 TTCGCACATTGCCGCAAGGTCTTTAAAAGAATCTACAACTTCAACGGCATCAACTCCGTG 660
||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 678 TTCGCACATTGTGGCAAGGTCTTTAAAAGAATCCACAAATTCAACGGCATCAACTCCGTG 737
Query 661 GATCCATCTCTAAACAAGGCTTACGCTATTGAGCTTCAAAAGGCTTGTCCTAAGAATGTG 720
|| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 GACCCAACTTTAAACAAGGCTTACGCTATTGAGCTTCAAAAGGCTTGTCCTAAGAATGTG 797
Query 721 GACCCAAGAATTGCAATCAACATGGACCCAGTCACGCCCAAGACGTTTGACAACACTTAC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 GACCCAAGAATTGCAATCAACATGGACCCAGTCACGCCCAAGACGTTTGACAACACTTAC 857
Query 781 TTCAAGAATCTTCAACAAGGCAAAGGTCTCTTCACCTCCGATCAAGTTCTCTTCACGGAC 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 TTCAAGAATCTTCAACAAGGCAAAGGTCTCTTCACCTCCGATCAAGTTCTCTTCACGGAT 917
Query 841 GGTCGCTCTAGGCCCACCGTTAATGCTTGGGCCTCAAACTCTACGGCCTTCAACCGCGCT 900
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 918 GGTCGCTCTAGGCCCACCGTTAATGCTTGGGCCTCAAACTCTACGGCCTTTAACCGCGCT 977
Query 901 TTTGTGACCGCCATGACCAAACTTGGCCGTGTTGGTGTTAAGAATAGCCGCAATGGAAAC 960
||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 978 TTTGTGATAGCCATGACCAAACTTGGCCGTGTTGGAGTTAAGAATAGCAGCAATGGAAAC 1037
Query 961 ATTCGTCGTGACTGTGGTGCGTTTAACTAG 990
|| |||||||| ||||||||||||||||||
Sbjct 1038 ATCCGTCGTGATTGTGGTGCGTTTAACTAG 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48475951855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5