BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897878
Length=1656
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49970.1 | Symbols: | Phototropic-responsive NPH3 family pr... 1404 0.0
AT5G67385.1 | Symbols: | Phototropic-responsive NPH3 family pr... 364 1e-99
> AT3G49970.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr3:18527216-18529066 REVERSE LENGTH=1581
Length=1581
Score = 1404 bits (760), Expect = 0.0
Identities = 907/976 (93%), Gaps = 18/976 (2%)
Strand=Plus/Plus
Query 682 GACATTTTTGAGAAAGAGGCAAAGAAGATGGAGGCGGAACAAGAACATGAGAAAAGGTTG 741
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 619 GACATTTTTGGGAAAGAGGCAAAGAAGATGGAGGCAGAACAAGAACATGAGAAAAGGTTG 678
Query 742 ATTCTTGAAACAATTGTGAGTCTTCTTCCGAGGGAGAGAAACTCAGTGTCAGTTAGCTTT 801
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 679 ATCCTTGAAACAATAGTGAGTCTTCTTCCGAGGGAGAGAAACTCAGTGTCAGTTAGTTTT 738
Query 802 CTTTCGATACTTTTAAGAGCTGCGATATACCTCGAAACCACGGTAGCTTGCAGGCTTGAT 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 CTTTCGATACTTTTAAGAGCTGCGATATACCTCGAAACCACGGTAGCTTGCAGGCTTGAT 798
Query 862 TTGGAGAAGAGAATTGGATTGCAATTAAGACAAGCCGTGATTGATGATCTCTTGATTCCT 921
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 799 TTGGAGAAGAGAATGGGATTGCAATTAAGACAAGCTGTTATTGATGATCTCTTGATTCCT 858
Query 922 TCTTACTCATTCAGTGGAGACAACACAATGTTTGATGTTGACACTGTTCAACGCATCCTC 981
| ||| ||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 859 TATTATTCATTCAATGGAGACAACACAATGTTAGATGTTGATACTGTTCAACGTATCCTC 918
Query 982 ATGAACTATCTTGAGTTTGAAGTTGAAGGAAACTCTGCTGACTTTGCTAGTGATATTGGT 1041
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 919 ATGAACTATCTTGAGTTTGAAGTTGAAGGAAACTCTGCTGATTTTGCTAGTGATATTGGT 978
Query 1042 GAATTGATGGAGAGTTATCTGGCTGAAATCGCTTCTGATAAAAACATAAACTTGGCGAAG 1101
||||| ||||||| |||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 979 GAATTAATGGAGACTTATCTGGCTGAAATCGCTTCTGATAGAAACATAAACTTCGCGAAG 1038
Query 1102 TTCATCAGTTTTGCTGAATGCATTCCAAAACAGTCTCGGGTTACTGAAGATGGGATGTAT 1161
|||||| ||||||||||||| ||||| ||||| | | || | ||||||||
Sbjct 1039 TTCATCGGTTTTGCTGAATGTATTCCGAAACA-------G-T-CT----A--GGATGTAT 1083
Query 1162 CGAGCCATAGACATCTACCTCAAGACACATCCGAATATAAGTGAAATGGAGAAGAAGAAA 1221
|||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1084 CGAGCCATTGACATCTTCCTCAAGACACATCCGAATATAAGTGAAGTGGAGAAGAAGAAA 1143
Query 1222 GTTTGCAGCTTAATGGACTATCAAAAGATATCGCGAGAAGTGTATGCTCACGCAGCTCAA 1281
||||| ||||||||||||| | ||||| |||||||||| |||||||||||||||||||||
Sbjct 1144 GTTTGTAGCTTAATGGACTGTAAAAAGCTATCGCGAGATGTGTATGCTCACGCAGCTCAA 1203
Query 1282 AATGATCGTCTCCCTGAAATTTTAAGCGATTCCGATTCTCCAGCAGCAGAAACCGCAGAA 1341
|| |||||| ||| |||| ||||||| |||| |||||||||||| ||| ||| ||||||
Sbjct 1204 AACGATCGTTTCCAAGAAAATTTAAGCAATTCAGATTCTCCAGCACCAGCAACAGCAGAA 1263
Query 1342 GAAACTATTCCTCCTCCTGAGCTCAGCTCCTACAAGAATGAACTCTCCAAACTAAACCGG 1401
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 AAAACTCTTTCTCCTCCTGAGCTCAGCTCCTACAAGAATGAACTCTCCAAACTAAACCGG 1323
Query 1402 GAAAACCAATACTTGAAGCTTGAGTTGCTCAAAGTGAAAATGAAGTTCAAGGAGTTTGAG 1461
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1324 GAAAACCAATACTTGAAGCTTGAGTTGCTCAAAGTGAAAATGAAGTTCAAGGAGTTGGAG 1383
Query 1462 AAGGAGAAAGCTTATGAAGTCATGAGTGGTTCGGATTGTTCTTCTTCGGTTTCAACTGCT 1521
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 AAGGAGAAAGCTTTTGAAGTCATGAGTGGTTCGGATTGTTCTTCTTCGGTTTCAACTGCT 1443
Query 1522 TCGGTTGTTAAGCCTCGATTACCAAGAAAGTCATTTATAAGCTCTGTTTCTCAAAAACTC 1581
||||| | ||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1444 TCGGTGGCTAAGCCTCGATTACCTAGAAAGTCATTTATAAACTCTGTTTCTCAAAAACTC 1503
Query 1582 GGAAAGCTTA--A-CCCTTTTGGCCTCAAACAAGGACAAACCAAACCACCTAAAAGCCGA 1638
|||||||||| | |||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1504 GGAAAGCTTATTAACCCTTTTGGCCTCAAACAAGGACAAACCAAACAACCTAAAAGCAGA 1563
Query 1639 AGACACTCTATATCTT 1654
||||||||||||||||
Sbjct 1564 AGACACTCTATATCTT 1579
Score = 859 bits (465), Expect = 0.0
Identities = 554/595 (93%), Gaps = 13/595 (2%)
Strand=Plus/Plus
Query 92 ATGTTGGAGAAAC-TTCGTTTTCACTCCACAAGTTTCCACTTGTTTCAAAATGTGGGTTT 150
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTGGAGAAACTTTCGTTTTTACTCCACAAGTTTCCACTTGTTTCAAAATGTGGGTTT 60
Query 151 ATAAAGAAACTTGCTTCCAAATCAAGCAACGATTCGAACATTACCGTTATCAAAATCCAA 210
||||||||||||||||| |||||||||| ||||| || | | |||||| ||||| |
Sbjct 61 ATAAAGAAACTTGCTTCTGAATCAAGCAATGATTC---CA--A-CATTATCAGAATCCCA 114
Query 211 GATTTTCCCGGAGGTGCAG-AGGCATTTGAGCTAG-CAATCAAGTTCTGCTACGACATAA 268
|||||||| |||||||||| ||| ||||||||||| | ||||| ||||||||||||||||
Sbjct 115 GATTTTCCTGGAGGTGCAGAAGG-ATTTGAGCTAGTC-ATCAAATTCTGCTACGACATAA 172
Query 269 GCTTCGAGATAAACACAGAGAACATTGCGATGCTACGT-TGTGCAGCAGAGTATCTAGAG 327
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 173 GCTTCGAGATAAACACAGAGAACATTGCGATGCTAC-TATGTGCAGCAGAGTATCTAGAG 231
Query 328 ATGACAGAGGAACACTCTGTTGAAAACCTAGTGGAGACAATAGAGGTTTACCTAAACGAA 387
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 232 ATGACAGAGGAACACTCTGTTGAAAACCTAGTGGAGACAATAGAGGTTTACTTAAACGAA 291
Query 388 GTGGTCCTCAAGAGTTTATCGAAATCGGTTAAAGTTCTGCGAAAATCTCAAGATTTGTTG 447
||| |||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct 292 GTGATCCTCAAGAGTTTATCAAAATCAGTTAAAGTTCTGCAAAAATCTCAAGATTTGTTG 351
Query 448 CCTATAGCCGAGAGAGTGAGACTCGTGGACCGGTGTATCGATTCAATTGCTTATGGAGTT 507
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
Sbjct 352 CCTATAGCCGAGAGAGTGAGACTCGTGGACCGGTGTATCGATTCAATCGCTTATGCAATA 411
Query 508 TGTCAGGAGAGCCAGAGCAATGAGGACATAGTTGACTGGTGGGCTGAGGATTTAGCTGGT 567
|| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
Sbjct 412 TGCCAGGAGAGCCAGAGCAATGAGGATATAGTTGACTGGTGGGCTGACGATTTAGCTGTT 471
Query 568 CTAAGGATTGATATGTTTCGACGTGTCTTGGTCGCGATGATTGCTAGAGGGTTTAAGCGA 627
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 472 CTAAAGATTGATATGTTTCGACGTGTCTTGGTCGCGATGATCGCTAGAGGGTTTAAGAGA 531
Query 628 TACTCACTTGGTCCAGTACTTATGCTCTATGCCCAAAAAGCTCTTAGAGGGTTGG 682
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 532 TACTCACTTGGTCCAGTACTTAAACTCTATGCCGAAAAAGCTCTTAGAGGGTTGG 586
> AT5G67385.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr5:26884664-26887204 FORWARD LENGTH=2026
Length=2026
Score = 364 bits (197), Expect = 1e-99
Identities = 422/527 (80%), Gaps = 30/527 (6%)
Strand=Plus/Plus
Query 10 AAGAAGGAGCTTCTGTCCTCAGCTATGGAGAGAACTAGTGAATGGATTTCTTCTCAAGAA 69
||||| || ||| |||||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 103 AAGAAAGATCTTTTGTCCTCAGCTATGAAAAGAACCAGTGAATGGATTTCTTCTCAAGAA 162
Query 70 AT-TCCTAGTGACGTCACTGTTCATGTTGGAGAAACTTCGTTTTCACTCCACAAGTTTCC 128
| | ||||||| ||||| |||||||| |||||| ||||||||||||| |||||||||||
Sbjct 163 GTAT-CTAGTGATGTCACCGTTCATGTAGGAGAAGCTTCGTTTTCACTGCACAAGTTTCC 221
Query 129 ACTTGTTTCAAAATGTGGGTTTATAAAGAAACTTGCT-TCCAAATCAAGCAACGATTCGA 187
||| | ||||||||||||||||| |||||||||| | || |||||||||| |||||
Sbjct 222 ACTCATGTCAAAATGTGGGTTTATCAAGAAACTTG-TGTCGGAATCAAGCAAAGATTC-- 278
Query 188 ACATT--ACCGTTATCAAAAT-CCAAGATTTTCCCGGAGG-TGCAGAGGCATTTGAGCTA 243
| ||| || |||||||| || || |||| |||| ||||| | | || ||||||||||||
Sbjct 279 AGATTCCACTGTTATCAAGATACC-AGATATTCCAGGAGGCT-CTGAAGCATTTGAGCTA 336
Query 244 GCAATC-AAGTTCTGCTACGACA-TAAGCTTCGAGATAAACACAGAGAACATTGCGATGC 301
|| | ||||||||||||| || ||| ||| || || | ||||||||||||||| |||
Sbjct 337 GC-GGCTAAGTTCTGCTACGGCATTAA-CTTTGATATGAGCACAGAGAACATTGCCATGT 394
Query 302 TACGTTGTGCAGCAGAGTATCTAGAGATGACAGAGGAACACTCTGTTGAAAACCTAGTGG 361
| || |||||||| |||||||||||||||||||||||||||||||| ||||| || || |
Sbjct 395 TGCGATGTGCAGCGGAGTATCTAGAGATGACAGAGGAACACTCTGTGGAAAATCTCGTTG 454
Query 362 -AGACAATAGAGGTTTACCTAAACGAAGTGG-TCCTCAAGAGTTTATCGAAATCGGTTAA 419
| | | || | |||| | || ||||| | || ||||||| ||||||| ||| | |
Sbjct 455 TA-AGAGCCGAAGCTTACTTGAATGAAGTAGCTC-TCAAGAGCTTATCGAGTTCGATCAC 512
Query 420 AGTTCT-GCGA-AAATCTCAAGAT-TTGTTGCCTATAGCCGAGAGAGTGAGACTCGTG-G 475
||| || || | ||||| | || |||||||| || || || ||||| | ||| || |
Sbjct 513 AGT-CTTGC-ACAAATCAGA-GAAGTTGTTGCCCATTGCTGAAAGAGTCAAACTTGTAAG 569
Query 476 ACCGGTGTATCGATTCAATTGCTTATG-GAGTTTGTCAGGAGAGCCA 521
||| || |||||| ||||||||||| || || |||| ||||||||
Sbjct 570 -CCGTTGCATCGATGCAATTGCTTATATGACTT-GTCAAGAGAGCCA 614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81826888350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5