BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897887

Length=306
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G09840.1 | Symbols: CDC48, ATCDC48, CDC48A | cell division c...   207    4e-53
  AT3G23980.1 | Symbols: BLI, KOS1 | BLISTER | chr3:8662433-86677...   143    1e-33


> AT3G09840.1 | Symbols: CDC48, ATCDC48, CDC48A | cell division 
cycle 48 | chr3:3019340-3023052 FORWARD LENGTH=2804
Length=2804

 Score =  207 bits (112),  Expect = 4e-53
 Identities = 127/134 (95%), Gaps = 1/134 (1%)
 Strand=Plus/Minus

Query  150  CCTTGAAGAGAATGGTATCATCACGGAAGAGCTGAAGCTTCTCCATGGTTGCAGGGTGAA  209
            |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  347  CCTTGATGAGAATGGTATCACCACGGAAGAGCTGAAGCTTCTCCATGGTTGCAGGGTGAA  288

Query  210  GAGATACGACGGAGTTATCATCGTTGA-AGCCTCATCGACGACAAGGCTGTTCGGAGACT  268
            |||| |||||||||||||||||||||| ||||||||||||||| || | |||||||||||
Sbjct  287  GAGAGACGACGGAGTTATCATCGTTGATAGCCTCATCGACGACGAGACGGTTCGGAGACT  228

Query  269  TCTTCCTCTCGAGA  282
            ||||||||||||||
Sbjct  227  TCTTCCTCTCGAGA  214


> AT3G23980.1 | Symbols: BLI, KOS1 | BLISTER | chr3:8662433-8667752 
REVERSE LENGTH=2842
Length=2842

 Score =  143 bits (77),  Expect = 1e-33
 Identities = 90/96 (94%), Gaps = 1/96 (1%)
 Strand=Plus/Minus

Query  1     ATGACTTCAGAAGCCAGTATTTGGGAACGCTCATCAGCAGCATTATATTCTAGCTGCGCG  60
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  1685  ATGACTTCAGAAGCCAGTATTTGGGAACGCTCATCAGCAGCATTACATTCTAGCTGCGCG  1626

Query  61    TTTGCATATTCAATCCTGACAGATTCAAGCTC-CCC  95
             |||||||| |||| ||||||||| ||||| || |||
Sbjct  1625  TTTGCATACTCAACCCTGACAGACTCAAGTTCGCCC  1590



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14175505218


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5