BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897888

Length=807
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G09840.1 | Symbols: CDC48, ATCDC48, CDC48A | cell division c...   147    2e-34


> AT3G09840.1 | Symbols: CDC48, ATCDC48, CDC48A | cell division 
cycle 48 | chr3:3019340-3023052 FORWARD LENGTH=2804
Length=2804

 Score =  147 bits (79),  Expect = 2e-34
 Identities = 88/92 (96%), Gaps = 1/92 (1%)
 Strand=Plus/Plus

Query  376  GGCT-TCAACGATGATAACTCCGTCGTATCTCTTCACCCTGCAACCATGGAGAAGCTTCA  434
            |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  256  GGCTATCAACGATGATAACTCCGTCGTCTCTCTTCACCCTGCAACCATGGAGAAGCTTCA  315

Query  435  GCTCTTCCGTGATGATACCATTCTCTTCAAGG  466
            ||||||||||| ||||||||||||| ||||||
Sbjct  316  GCTCTTCCGTGGTGATACCATTCTCATCAAGG  347



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39283102954


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5