BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897921

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G50360.1 | Symbols: ATCEN2, CEN1, CEN2 | centrin2 | chr3:186...   843    0.0  


> AT3G50360.1 | Symbols: ATCEN2, CEN1, CEN2 | centrin2 | chr3:18674337-18675712 
FORWARD LENGTH=804
Length=804

 Score =  843 bits (456),  Expect = 0.0
 Identities = 493/511 (96%), Gaps = 2/511 (0%)
 Strand=Plus/Plus

Query  1    ATGTCAAGTTTCA-ACAGAGGTGTATCGAGGAAAGAGAAACCGAGACGTCCTCATGGGTT  59
            ||||| ||| | | |||||  ||| ||||| ||||||||||||||||||| |||||| ||
Sbjct  85   ATGTCGAGTAT-ATACAGAACTGTTTCGAGAAAAGAGAAACCGAGACGTCATCATGGATT  143

Query  60   GACGACGCAGAAGAAGCAAGAGATTAAGGAAGCTTTTGAGCTATTTGACACTGATGGATC  119
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  144  GACGACACAGAAGAAGCAAGAGATTAAGGAAGCTTTTGAGCTATTTGACACTGATGGTTC  203

Query  120  TGGTACCATTGATGCTAAAGAGCTTAATGTTGCTATGAGGGCGCTTGGTTTTGAAATGAC  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  204  TGGTACCATTGATGCTAAAGAGCTTAATGTTGCTATGAGGGCGCTTGGTTTTGAAATGAC  263

Query  180  GGAAGAGCAAATCAACAAAATGATAGCTGATGTGGACAAAGATGGAAGTGGAGCGATAGA  239
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct  264  GGAAGAGCAAATCAACAAAATGATAGCTGATGTGGATAAAGATGGAAGTGGAGCTATAGA  323

Query  240  TTTTGATGAGTTTGTTTATATGATGACTGCTAAGATTGGTGAAAGAGACACAAAAGAAGA  299
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  324  TTTTGATGAGTTTGTTCATATGATGACTGCTAAGATTGGTGAAAGAGACACAAAAGAAGA  383

Query  300  GCTCACTAAAGCATTCCAGATCATTGATCTTGACAAAAATGGGAAGATATCTCCGGATGA  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  384  GCTCACTAAAGCATTCCAGATCATTGATCTTGACAAAAATGGGAAGATATCTCCGGATGA  443

Query  360  TATCAAACGCATGGCAAAGGACTTGGGTGAGAATTTCACTGATGCTGAGATACTAGAGAT  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  444  TATCAAACGCATGGCAAAGGACTTGGGTGAGAATTTCACTGATGCTGAGATACGAGAGAT  503

Query  420  GGTTGAAGAAGCAGACCGGGACCGTGATGGTGAAGTTAACATGGATGAATTCATGAGGAT  479
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  504  GGTTGAAGAAGCAGACCGAGACCGTGATGGTGAAGTTAACATGGATGAATTCATGAGGAT  563

Query  480  GATGAGGAGAACAGCTTATGGTGGTAACTAG  510
            |||||||||||| ||||||||||||||||||
Sbjct  564  GATGAGGAGAACTGCTTATGGTGGTAACTAG  594



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24363561295


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5