BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897938
Length=561
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50510.1 | Symbols: LBD28 | LOB domain-containing protein 28... 586 7e-167
> AT3G50510.1 | Symbols: LBD28 | LOB domain-containing protein
28 | chr3:18744887-18745623 REVERSE LENGTH=737
Length=737
Score = 586 bits (317), Expect = 7e-167
Identities = 452/517 (87%), Gaps = 10/517 (2%)
Strand=Plus/Plus
Query 1 ATGTTGTTTCATCAAATGGACAAAATATCGACACCATGCGCGGCATGCAAGCAGCTGAGG 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 26 ATGATGTTTCATCAAATGGACAAAATATCGACACCATGCGCGGCATGCAAGCACCTGAGG 85
Query 61 AGAAAATGCACAAAAGATTGTGTGTTTGCGCCTTACTTCCCCACGACCAAACAAGAAAAC 120
|||||||||||| ||||||||||||||||||||||||||||| |||| |||| || |||
Sbjct 86 AGAAAATGCACAGAAGATTGTGTGTTTGCGCCTTACTTCCCCTCGACTAAACTGGACAAC 145
Query 121 TACGAAGCGGTCCACAAGGTATTCGGTGCAAGCCATGTGGCTACACTTATCAAC-GATCT 179
||||||||||| ||||||||||| || ||||||||||||||||||||||||||| | |||
Sbjct 146 TACGAAGCGGTTCACAAGGTATTTGGAGCAAGCCATGTGGCTACACTTATCAACAG-TCT 204
Query 180 GCACCCATTG--AAGAGAGAATTTGCCATGAACA-GCCTCGCTTGGGAGGCACGAGTTCG 236
||||||| | || ||||||||||||||| ||| || ||||||||||||||| |||||
Sbjct 205 TCACCCAT-GCCAA-AGAGAATTTGCCATGGACACGC-TCGCTTGGGAGGCACAAGTTCA 261
Query 237 TGTCAAAGATCCGGTCTATGGCTG-CACGGCTATCATTGACCGCCTCGAAAGTCAGCTTA 295
| ||| ||||||||| ||||||| | || ||||||| || |||| |||||| |||
Sbjct 262 AGCCAATGATCCGGTCAATGGCTGTCTGGG-TATCATTTACAACCTCCTTAGTCAGATTA 320
Query 296 AAGACTCGGAAGAACAACTCGCGATGGTCAAGAACGAGCTCGCCTCTTACGGTATCGTCC 355
|||||| |||||||||||||||||| ||||||||||| || ||||||||| |||||||||
Sbjct 321 AAGACTTGGAAGAACAACTCGCGATCGTCAAGAACGAACTTGCCTCTTACTGTATCGTCC 380
Query 356 CGACATGTGTGCCATCGCCTCCGATGATGTATCAGCAAATGCATAACAATCCTATGACGA 415
| |||| ||||||| | ||| |||||| | ||| | ||||||||||||||||||||| ||
Sbjct 381 CCACATTTGTGCCACCACCTTCGATGACGAATCTGGAAATGCATAACAATCCTATGATGA 440
Query 416 TATCGGAATATACACCTAACAATGGTGGTTTTTTAACGGGTCAACAGTTACATGACGAGG 475
|| ||||| | |||||||| || ||||||| |||||||||||||||||| || ||||||
Sbjct 441 TACCGGAACACACACCTAATAACGGTGGTTGTTTAACGGGTCAACAGTTGTATAACGAGG 500
Query 476 CACAACGTTTTGTATCCACACAACGCGCTCAAATGCA 512
| |||||||||| |||||||||| |||||||||||||
Sbjct 501 CTCAACGTTTTGCATCCACACAAAGCGCTCAAATGCA 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26925502792
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5