BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897948
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50610.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 558 2e-158
> AT3G50610.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G66816.1);
Has 125 Blast hits to 60 proteins in 16 species: Archae -
0; Bacteria - 2; Metazoa - 10; Fungi - 4; Plants - 97; Viruses
- 0; Other Eukaryotes - 12 (source: NCBI BLink). | chr3:18779723-18780412
REVERSE LENGTH=690
Length=690
Score = 558 bits (302), Expect = 2e-158
Identities = 329/342 (96%), Gaps = 1/342 (0%)
Strand=Plus/Plus
Query 313 GAAAGGTTTCAACAAACAAACGGTCAAAATCATTTCAAAACCGGATCTACGGACGAATTT 372
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 350 GAAA-GCTTCAACAAACAAACGGTCAAAATCATTTCAAAACCGGATCTACGGACGATTTT 408
Query 373 GCACCGACTTCTCCGGGAAACAGTCCTGGGATAGGTCACAAGAAAGGGAATGCAAATGTT 432
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 409 GCACCTACTTCTCCGGGAAACAGTCCTGGGATAGGTCACAAGAAAGGGCATGCAAATGTT 468
Query 433 AAAGGGTTTAAGGATGACTTCGCACCCACGGAAGAAATACGATTGAAGAAAATGAACGGT 492
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 469 AAAGGGTTTAAAGATGACTTCGCACCCACGGAAGAAATACGATTGCAGAAAATGAACGGT 528
Query 493 AAAGATCATTTCAAATCCGGATCTACCGATGATTTCGCACCTACTACTCCAGGAAACAGT 552
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 529 CAAGATCATTTCAAAACCGGATCTACCGATGATTTCGCACCTACAACTCCAGGAAACAGT 588
Query 553 CCCGGGATGGGCCATAAGAAAGGAGATGACTTCAAACCCACGACACCAGGACATAGCCCC 612
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 CCCGGTATGGGCCATAAGAAAGGAGATGACTTCAAACCCACGACACCAGGACATAGCCCC 648
Query 613 GGGGTTGGTCATGCTGTCAATAACAATGAACCTAAAGCTTAA 654
|||||||||||||||||||| ||| |||||||||||||||||
Sbjct 649 GGGGTTGGTCATGCTGTCAAGAACGATGAACCTAAAGCTTAA 690
Score = 448 bits (242), Expect = 4e-125
Identities = 293/318 (92%), Gaps = 2/318 (1%)
Strand=Plus/Plus
Query 1 ATGGTATTTGACCAAACACCAATCACCACCGAAGCAAGAAGATTGAGGAATACAAACGAC 60
||||||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 1 ATGGTATTTTACCAAACACCAATCACCACTGAAGCAAGAAGCTTGAGGAAAACAAACGAC 60
Query 61 CAAGATCATTTCAAAGCTGGATCTACAGATGATTTCGCGCCTACTTCTCCAGGAAACAGT 120
||||||||||| |||||||||| |||||||||||||| ||| ||||||||||||||||||
Sbjct 61 CAAGATCATTTTAAAGCTGGATTTACAGATGATTTCGTGCCCACTTCTCCAGGAAACAGT 120
Query 121 CCTGGCGTGGGACACAGAAAAGGTAAGGTGAATGTAGAAGGGTTTCAAGATGACTTCAAG 180
||||| |||||||||| ||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 121 CCTGGTGTGGGACACAAAAAAGGTAATGTGAATGTTGAAGGGTTTCAAGATGACTTCAAG 180
Query 181 CCCACGGAAGGAAGAAAGTTGCTGAAAACTAACGGTCAAGATCATTTCAAAACCGGATCA 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 CCCACGGAAGGAAGAAAGTTGCTGAAAACTAACGTTCAAGATCATTTCAAAACCGGATCT 240
Query 241 ACAGACGATTTCGCACCCACTTCTCCAGGACACAGTCCCGGGGTGGGACATAGGAAAG-A 299
||||| ||||| ||||| ||||| || ||||||||||||||||||||||| | ||||| |
Sbjct 241 ACAGATGATTTTGCACCTACTTCCCCTGGACACAGTCCCGGGGTGGGACACAAGAAAGGA 300
Query 300 CACTGCCAATGTTGAAAG 317
| || ||||||||||||
Sbjct 301 AA-TGTCAATGTTGAAAG 317
Score = 202 bits (109), Expect = 4e-51
Identities = 208/254 (82%), Gaps = 14/254 (6%)
Strand=Plus/Plus
Query 52 ACAAACGACCAAGATCATTTCAAAGCTGGATCTACAGATGATTTCGCGCCTACTTCTCCA 111
||||||| ||| ||||||||||| | |||||||| || ||||| || |||||||||||
Sbjct 364 ACAAACGGTCAAAATCATTTCAAAACCGGATCTACGGACGATTTTGCACCTACTTCTCCG 423
Query 112 GGAAACAGTCCTGGCG-TGGGACAC-AGAAAAGGTAAGGTGAATG-TAGAAGGGTTTCAA 168
|||||||||||||| | | || ||| || ||||| | | |||| || |||||||| ||
Sbjct 424 GGAAACAGTCCTGG-GATAGGTCACAAG-AAAGGGCATGCAAATGTTA-AAGGGTTTAAA 480
Query 169 GATGACTTC-AAGCCCACGGAAGGAAGA-AAG-TTGCTGAAAACT-AACGGTCAAGATCA 224
||||||||| | ||||||||| ||| | | | |||| ||||| | ||||||||||||||
Sbjct 481 GATGACTTCGCA-CCCACGGAA-GAA-ATACGATTGCAGAAAA-TGAACGGTCAAGATCA 536
Query 225 TTTCAAAACCGGATCAACAGACGATTTCGCACCCACTTCTCCAGGACACAGTCCCGGGGT 284
||||||||||||||| || || ||||||||||| || |||||||| |||||||||| |
Sbjct 537 TTTCAAAACCGGATCTACCGATGATTTCGCACCTACAACTCCAGGAAACAGTCCCGGTAT 596
Query 285 GGGACATAGGAAAG 298
||| |||| |||||
Sbjct 597 GGGCCATAAGAAAG 610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5