BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897983

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G50845.1 | Symbols:  | Protein of unknown function (DUF59) |...   749    0.0  


> AT3G50845.1 | Symbols:  | Protein of unknown function (DUF59) 
| chr3:18899930-18901209 REVERSE LENGTH=642
Length=642

 Score =  749 bits (405),  Expect = 0.0
 Identities = 445/465 (96%), Gaps = 0/465 (0%)
 Strand=Plus/Plus

Query  1    ATGACTCTGGGACTGATAAACGCGAATCCAGTTGTGCAAGCTAAGAAGGAACGGCTTGTT  60
            |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct  1    ATGACTCTGGGACTGATAAACGCGAATCCAGTGGTGCAAGCTAAGAAGGAAGGGCTTGTT  60

Query  61   CGTAGAGAAGATCAATATAGAGATGATGGTGTTGATCCTCTTGAAATCTATGAGTATGTA  120
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct  61   CGTAGAGAAGATCAATATAGAGATGATGGTGTTGATCCTCTTGAAATATATGATTATGTA  120

Query  121  AGAGATATAAGAGATCCAGAACATCCTTATACTTTGGAGCAGCTAAGTGTTCTCTCTGAA  180
            ||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct  121  AGAGATATAAGAGATCCAGAACACCCTTATACTTTGGAGCAGCTAAGGGTTGTCTCTGAA  180

Query  181  GAATCTGTTACTGTCGATGACAAGCTTGATCGCATCCTGATAATGTTTACACCGACGATT  240
            |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct  181  GAATCTGTTACTGTCGATGACAAGCTCGATCGCATCCTGATAACGTTTACACCGACGATT  240

Query  241  CAGCATTGTAGTATGGCAAATATAATTGGTCTGTGTTTGAGAGCTAAGCTTAAAGAATGT  300
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  241  CAGCATTGTAGTATGGCAAATATAATTGGTCTGTGTCTGAGAGCTAAGCTTAAAGAATGT  300

Query  301  TTGCCACTTCATTACAAGGTTGATATCAGAGTGTCACCTGGCTCTCACGCTGATGAAGTT  360
            |||| |||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct  301  TTGCAACTTCATTACAAGGTTGATATCAGAGTGTCTCCGGGTTCTCACGCTGATGAAGTT  360

Query  361  TCAGTGAATAAACAACTGAATGATAAAGAAAGGGTGGCGGCCGCATTGGAGAATCCTAAT  420
            ||||| || ||||||||||||||||||||||| |||| ||| ||||||||||||||||||
Sbjct  361  TCAGTTAACAAACAACTGAATGATAAAGAAAGAGTGGTGGCTGCATTGGAGAATCCTAAT  420

Query  421  CTCCGTCAGCTCGTGGATGAATGTATCTACTCCGATGAGATATGA  465
            |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  421  CTCCGTCAGCTCGTGGATGAGTGTATCTACTCCGATGAGATATGA  465



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22103024680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5