BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897986
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50870.1 | Symbols: MNP, HAN, GATA18 | GATA type zinc finger... 1410 0.0
AT4G33660.1 | Symbols: | unknown protein; Has 30201 Blast hits... 58.4 1e-07
> AT3G50870.1 | Symbols: MNP, HAN, GATA18 | GATA type zinc finger
transcription factor family protein | chr3:18910990-18912608
FORWARD LENGTH=1249
Length=1249
Score = 1410 bits (763), Expect = 0.0
Identities = 848/889 (95%), Gaps = 5/889 (1%)
Strand=Plus/Plus
Query 1 ATGATGCAGACTCCGTACACAACTTCAACGCAGGGGCAATATTGTCATTCTTGTGGAATG 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 123 ATGATGCAGACTCCGTACACTACTTCAACGCAGGGGCAATATTGTCATTCTTGTGGAATG 182
Query 61 TTCCACCACCATAGCCAAAGCTGCTGCTacaacaacaacaacaacTCCAACGCCGGTTCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TTCCACCACCATAGCCAAAGCTGCTGCTACAACAACAACAACAACTCCAACGCCGGTTCT 242
Query 121 TACTCGATGGTCTTCTCCATGCAAAACGGCGGCGTTTACGAGCAGAACGGCGAGGACTAT 180
||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct 243 TACTCGATGGTCTTCTCCATGCAAAACGGTGGCGTTTTCGAGCAGAACGGTGAGGACTAT 302
Query 181 CATCACTCTTCCTCCGTCGTTGACTGTACTCTGTCTCTTGGAACTCCTTCTACGAGGCTT 240
||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 303 CATCACTCTTCCTCCCTCGTTGACTGCACTCTCTCTCTTGGAACTCCTTCTACGAGGCTT 362
Query 241 TGTGAAGAAGACGAGAAACGTAGACGCTCTACGTCCTCTGGTGCTTCTTCTTGCATCTCC 300
||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 363 TGTGAGGAAGATGAGAAACGTAGACGCTCTACTTCATCTGGTGCTTCTTCTTGCATCTCC 422
Query 301 AACTTCTGGGACTTGCTTCACACCAAAAACAAC---TCAAAAACGACACCGTACAATAAC 357
||||| ||||||||| ||||||||||||||||| || |||||| ||||||||||||||
Sbjct 423 AACTTTTGGGACTTGATTCACACCAAAAACAACAACTCCAAAACGGCACCGTACAATAAC 482
Query 358 GTTCCTTCTTTCTCCACTAACAAGCCAACTCGCGGTTGTTCCGCG-GGTGGTGGTGGAGG 416
||||||||||||||| |||||||||||| |||||||||||||| | ||||||||||| ||
Sbjct 483 GTTCCTTCTTTCTCCGCTAACAAGCCAAGTCGCGGTTGTTCCG-GTGGTGGTGGTGGCGG 541
Query 417 AGGAGGCGGTGGCGGAGGTGATTCTCTTCTCGCCAGACGCTGTGCCAACTGTGACACTAC 476
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 542 AGGAGGCGGTGGCGGAGGTGACTCTCTTCTCGCTAGACGCTGTGCCAACTGTGACACTAC 601
Query 477 TTCTACTCCACTATGGAGGAATGGTCCTAGAGGCCCCAAGTCCCTATGCAACGCATGCGG 536
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 602 TTCTACTCCACTATGGAGGAATGGTCCTAGAGGCCCTAAGTCCCTATGCAACGCATGCGG 661
Query 537 CATTCGTTTCAAGAAGGAAGAGAGAAGAACCACGGCGGCTTCAGGAAACACCGTCGTCGG 596
|||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||
Sbjct 662 CATTCGTTTCAAGAAGGAAGAGAGAAGAACTACTGCGGCTACAGGAAACACCGTCGTCGG 721
Query 597 AGCTGCACCAGTTCAAACCGACCAGTACGGACATCACAACTCCGGCTACAATAATTACCA 656
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 722 AGCTGCACCGGTTCAAACCGACCAGTACGGGCATCACAACTCTGGCTACAATAATTACCA 781
Query 657 TGCTGCCACTGGTAACAACAATAATAATGGTACTCCGTGGGCTCATCATCACTCGACGCA 716
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 782 TGCTGCCACTAATAACAACAATAATAATGGTACTCCGTGGGCTCATCACCACTCGACGCA 841
Query 717 GAGGGTTCCGTGTGATAATCCAGCTAACGAGATCAGGTTCATGGATGATTACGGCAGTGG 776
||||||||||||| || |||| || || ||||||||||||||||||||||||||||||||
Sbjct 842 GAGGGTTCCGTGTAATTATCCGGCAAATGAGATCAGGTTCATGGATGATTACGGCAGTGG 901
Query 777 AGTAGCAAACAACGTTGAATCCGACGGTGCTCACGGCGGTGTTCCGTTCCTTTCTTGGAG 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 AGTAGCAAACAACGTTGAATCCGACGGTGCTCACGGCGGTGTTCCGTTCCTTTCTTGGAG 961
Query 837 GCTTAATGTGGCGGATAGGGCAAGTCTTGTCCATGACTTTACCAGATGA 885
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 962 GCTTAATGTAGCGGATAGGGCAAGTCTTGTCCATGACTTTACCAGATGA 1010
> AT4G33660.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:16167286-16167951
REVERSE LENGTH=544
Length=544
Score = 58.4 bits (31), Expect = 1e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Minus
Query 403 GGTGGTGGTGGAGGAGGAGGCGGTGGCGGAGGTG 436
||||||||||||||||||||||||||||| ||||
Sbjct 260 GGTGGTGGTGGAGGAGGAGGCGGTGGCGGTGGTG 227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43201366420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5