BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897990
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50910.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2054 0.0
> AT3G50910.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G66480.1);
Has 76 Blast hits to 75 proteins in 28 species: Archae - 0;
Bacteria - 10; Metazoa - 7; Fungi - 2; Plants - 49; Viruses
- 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr3:18919513-18922238
FORWARD LENGTH=1861
Length=1861
Score = 2054 bits (1112), Expect = 0.0
Identities = 1258/1330 (95%), Gaps = 4/1330 (0%)
Strand=Plus/Plus
Query 1 ATGCCTACTTTTTCTGCTATTGCTTTGGATAGAATGCTAGAGCCAGGGGCTTCCACGTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 ATGCCTACTTTTTCTGCTATTGCTTTGGATAGAATGCTAGAGCCAGGGGCTTCCACGTCT 338
Query 61 GTCGAGAGTGTTCCAAGCTCAACAAATTCGTTTTATTCTAAGCCACCAATATCAAAACTG 120
|||||||||||||||||| |||| |||| ||||||||| |||||||| ||||||||||||
Sbjct 339 GTCGAGAGTGTTCCAAGCACAACTAATTTGTTTTATTCAAAGCCACCGATATCAAAACTG 398
Query 121 GAGAAAGGTAAAGGTAAATCACCTAGTGAGAGGACTGTTACTCGTCCTCTGATGTCACCT 180
||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||
Sbjct 399 GAGAAAGGTAAAGGTAAATTACCTAATGAGAGGACAGTTACTCGTCCTCTGATGTCACCT 458
Query 181 GCTCTCTACGCCACACCTGATGCAATTCCGCTTCCCAATTCGCCATCTTCTTTCCCACCA 240
||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 459 GCTCTCTACGCCACACCTGATGCGATTCCGCTTCCTAATTCGCCATCGTCTTTCCCACCG 518
Query 241 TCGCCTTATATCATCAACCACAAATCACGTGGACCTCCACGTCTTCTTAAAAGCTCTTCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCGCCTTATATCATCAACCACAAATCACGTGGACCTCCACGTCTTCTTAAAAGCTCTTCT 578
Query 301 GAGGCTAATGTTGTGTCTTCTTCCCACCAGAAGACGCTGGCAGAGGAAACTATTACTGCT 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 579 GAGGCTAATGTTGTGTCTTCTTCCCACCAGAAGACGCTGGAAGAGGAAACTATTACTGCT 638
Query 361 GAAACAGATGTAAAGGTTTCCCCTCGGAGGAGGTCCACCTCTTTCTCATTTCCTATCAGC 420
|||||||||||||||||||||||||||||||||||||| || ||||| |||||||||| |
Sbjct 639 GAAACAGATGTAAAGGTTTCCCCTCGGAGGAGGTCCACTTCCTTCTCGTTTCCTATCA-C 697
Query 421 -GAGGCTACTGAAGACGATTATTCCAATGGAGTCCATGCTCGTCCGGTTGGAAATTATAA 479
|||| ||||||||| ||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct 698 TGAGGTTACTGAAGATGATTATTCCAATGGAGTTCATGCTCGTACGGTTGGAAACTATAA 757
Query 480 TTTCGATGGTATTGTTGATGGTCCTTTTGGGCATTGGAGTTCACTTGACGGTAAAATTGG 539
||| ||||||||||||||||||||| |||| |||||||| | ||||| || |||| |||
Sbjct 758 TTTTGATGGTATTGTTGATGGTCCTGTTGGAAATTGGAGTCCGCTTGATGGGAAAAGTGG 817
Query 540 GAATGGAAAGTCAGAGTTGGATAATGCTGCTAATGGTTTAGAATGGGAAAATGTTCTGAC 599
|||||| ||||||||||||||||| |||||||||||||||||| ||| ||||| |||| |
Sbjct 818 GAATGGGAAGTCAGAGTTGGATAACGCTGCTAATGGTTTAGAACGGGTAAATGGTCTGTC 877
Query 600 TGAGCCTGTCACTATCAAAACAGACAAGGAGAGTGAGTCTGAAGATTTCTATGACCCAGG 659
|||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 878 TGAGCCAGTCCCTATTAAAACAGACAAGGAGAGTGAGTCAGAAGATTTCTATGACCCAGG 937
Query 660 TGAATCAGCAAGCTTCACAAGTAACACAGACGTAGAGGGTGATGCAGGAGACGAAGGTTC 719
||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 938 TGAATCAGCAAGCTTCACAAGTAACACAGACGTAGAGGGTGATGCTGGGGACGAAAGTTC 997
Query 720 ACATAGACTTGCCACACCTGTTGGAGAATTTTATGATGCTTGGGATGAACTATCAACAGA 779
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 998 ACAAAGACTTGCCACACCTGTGGGAGAGTTTTATGATGCTTGGGATGAACTATCAACCGA 1057
Query 780 CAGTGGAATGCAGAGTTCAGGTAACAACATCGAATCTGAATTAAGGGAGATAAGGCTGAG 839
|||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||
Sbjct 1058 CAGTGGAATGCAGAGTTCAGTTAATAACATCGAATCTGAATTAAGTGAGATAAGGCTGAG 1117
Query 840 TTTAGTAATGGAAATCGAGAAAAGAAAACAGACAGAGGAGGCTCTGGAGCAGATGCAAAT 899
|||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1118 TTTACTAATGGAAATCGAGAAGAGAAAACAGACAGAGGAGGCTTTGGAGCAGATGCAAAT 1177
Query 900 TCACTGGCAGAGACTCCGTGAGCAGTTGGCTCAGGTGGGTCTGTTCGTTCCCATTGATCC 959
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1178 TCACTGGCAGAGACTCCGTGAGCAGATGGCTCAGGTGGGTCTGTTCGTTCCTATTGATCC 1237
Query 960 TACCACCTCCACCAACAACATGAATCTATCAGAAGAACTACGCTGCCAACTCGAGGTTGC 1019
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1238 TACCGCCTCCACCAACAACATGAATCTATCAGAAGAACTACGCTGTCAACTCGAGATTGC 1297
Query 1020 CAGGTTTGTCTCTGACTCTTTAGGCAGAGGTATGGCGAAAG-CGGAGGTAGAGATGGAGA 1078
||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||
Sbjct 1298 GAGGTTTGTCTCTGACTCTTTAGGCAGAGGTATGGC-AAAGGCCGAGGTAGAGATGGAGA 1356
Query 1079 TGGAATCTATGCTCGAAACTAAGAACTTTGAAATAACACGGTTGTCTGACCGTCTACACT 1138
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1357 TGGAATCTATGCTCGAAACTAAGAACTTTGAAATCACACGGTTGTCTGACCGTCTACACT 1416
Query 1139 ACTATGAGGCTGTGAACAGAGAAATGTCTCAACGAAACCAAGAGGCCATAGAGGTGGCAC 1198
|||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1417 ACTACGAGGCCGTGAACAGAGAGATGTCTCAACGAAACCAAGAAGCCATAGAGGTGGCAC 1476
Query 1199 GACgagagaggcagaagagaaagaagaggcagagaTGGATTTGGGGATCAATTGCAGCAA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 GACGAGAGAGGCAGAAGAGAAAGAAGAGGCAGAGATGGATTTGGGGATCAATTGCAGCAA 1536
Query 1259 CCATTACTCTAGGAAGTGCGGCATTGGCATGGTCTTACATTCCTGCATCGAAACCATCAT 1318
|||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1537 CCATTACTCTAGGAAGCGCGGCATTGGCATGGTCTTACATTCCTGCAGCCAAACCATCAT 1596
Query 1319 CTGAAGTATC 1328
||||||||||
Sbjct 1597 CTGAAGTATC 1606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66465521580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5