BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898000
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50970.1 | Symbols: LTI30, XERO2 | dehydrin family protein |... 647 0.0
> AT3G50970.1 | Symbols: LTI30, XERO2 | dehydrin family protein
| chr3:18940777-18941554 FORWARD LENGTH=778
Length=778
Score = 647 bits (350), Expect = 0.0
Identities = 514/591 (87%), Gaps = 20/591 (3%)
Strand=Plus/Plus
Query 1 ATGGATTCTTACCAGAACCAATCCGGAGTGCCAAAGAAGGGGATGACGGAGAAAATCATG 60
||| ||||| ||||||| ||| ||||||||| ||||||||| || |||||||||||||||
Sbjct 49 ATGAATTCTCACCAGAATCAAACCGGAGTGCAAAAGAAGGGAATAACGGAGAAAATCATG 108
Query 61 GAGAAGCTACCAGGCCATCATGGTGCTACTAGCACCGGCGGTGTACACCACGAGAAGAAA 120
|||||||||||||| |||||||| |||||| ||| || | ||| |||||||||||||||
Sbjct 109 GAGAAGCTACCAGGTCATCATGGACCTACTAACACTGGTGTTGTTCACCACGAGAAGAAA 168
Query 121 GGTATGACGGAGAAAGTTATGGAGCAGCTACCAGGTAATCAT-G-GATA-TGGTAACACT 177
|| |||||||||||||||||||||||||| |||||| ||||| | | || |||| || |
Sbjct 169 GGGATGACGGAGAAAGTTATGGAGCAGCTGCCAGGTCATCATGGTGCTACTGGT-AC-C- 225
Query 178 GGCGGTGTTCACCACGAGAAGAAAGGTATGACTGAGAAAGTTATGGAGCAGCTACCAGGT 237
|| ||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||
Sbjct 226 GGTGGTGTTCACCACGAGAAGAAAGGAATGACGGAAAAAGTTATGGAGCAGCTGCCAGGT 285
Query 238 CATCATGAAACTCACCAGACTCATGGAACCAACACGGGTTATGG------TAACACTGGC 291
||||||| | | ||||| | | |||||||||||| |||||| |||||||||
Sbjct 286 CATCATGGATCACACCA-A-AC-TGGAACCAACACAACTTATGGTACTACTAACACTGGT 342
Query 292 GGTGTTCACCACGAGAAGAAAGGTATGACGGAGAAAGTTATGGAGAAACTACCAGGTCAT 351
||||||||||||||||| ||| || |||| || |||||||||||||||||||||||||||
Sbjct 343 GGTGTTCACCACGAGAAAAAAAGTGTGACCGAAAAAGTTATGGAGAAACTACCAGGTCAT 402
Query 352 CAGGGGTCACACCAAAC-GGGTACTAACACGGGTTATGGTGCTACTAACACTAATGTCGT 410
|| |||||||| ||||| ||| |||||||||| |||| | | ||||||||||||||||||
Sbjct 403 CATGGGTCACATCAAACTGGG-ACTAACACGGCTTAT-G-G-TACTAACACTAATGTCGT 458
Query 411 TCACCATCAGAAAAAAGGTATAGCTGAAAAAATTAAAGAGCAGTTGCCAGGTCATCAGGG 470
||||||| |||||||||||||||| ||||| ||||||||||| ||||||||||||| ||
Sbjct 459 TCACCATGAGAAAAAAGGTATAGCAGAAAAGATTAAAGAGCAACTGCCAGGTCATCATGG 518
Query 471 AGCTCACCAAACTGGAACCACTGTAAATCATGGTAATACTGGCGTTGTTCACCACGAAAA 530
| ||||| ||||||||||||| || | ||||||||||||||||||||||||| |||||
Sbjct 519 AACTCACAAAACTGGAACCACCACAAGTTATGGTAATACTGGCGTTGTTCACCATGAAAA 578
Query 531 GAAGAGTACGATTGATAAGATTAAAGAGAAGCTTCCCGGTGGTCATCACTA 581
|| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 579 TAAAAGTACGATGGATAAGATTAAAGAGAAGCTTCCCGGTGGTCATCACTA 629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27980419879
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5