BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898002
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50990.1 | Symbols: | Peroxidase superfamily protein | chr3... 1598 0.0
> AT3G50990.1 | Symbols: | Peroxidase superfamily protein | chr3:18943135-18944811
FORWARD LENGTH=1261
Length=1261
Score = 1598 bits (865), Expect = 0.0
Identities = 984/1039 (95%), Gaps = 17/1039 (2%)
Strand=Plus/Plus
Query 1 ATGAATACAAAAATGGTGAAGTCAAT----GG--TTGTTCT-TGCCCAAATCCCACTTGT 53
||||||||||||| |||||||||||| || ||||||| | | |||||| |||||||
Sbjct 21 ATGAATACAAAAACGGTGAAGTCAATGGCGGGCATTGTTCTCT-CTCAAATCTCACTTGT 79
Query 54 TGCGCTGTTTCCTCTTTGTATATGTTATCAAACACATGAAAGCACGAG-T-TCT-GCCTC 110
||||||||||||||| ||||| ||||||||||||||| |||||||||| | | | |||||
Sbjct 80 TGCGCTGTTTCCTCTATGTATTTGTTATCAAACACATCAAAGCACGAGCTCTGTAGCCTC 139
Query 111 TCTATCCCCTCAGTTTTACGACAACTCGTGCCCAAACGCACAAGCCATCGTTCAATCTTA 170
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 140 TCTATCCCCTCAGTTTTACGAGAACTCGTGCCCAAACGCACAAGCCATCGTTCAATCTTA 199
Query 171 CGTCGCCAAAGCATA-TTCCAATGACCCTCGCATGGCTGCCTCAATTCTTAGGCTCCATT 229
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 200 CGTCGCCAATGCATACTT-CAATGACCCTCGCATGGCTGCCTCAATTCTTAGGCTCCATT 258
Query 230 TCCATGACTGTTTCGTTAATGGATGTGATGCTTCCGTACTATTGGACAGTAGTGGAACCA 289
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 TCCACGACTGTTTCGTCAATGGATGTGATGCTTCCGTACTATTGGACAGTAGTGGAACCA 318
Query 290 TGGAAAGCGAGAAACGATCAAATGCAAATCGAGACTCTGCTCGAGGGTTCGAAGTCATTG 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 TGGAAAGCGAGAAACGATCAAATGCAAATCGAGACTCTGCTCGAGGGTTCGAAGTCATTG 378
Query 350 ACGAGATCAAGTCGGCCTTGGAAAATGAATGTCCTGAAACAGTTTCTTGCGCCGATCAAT 409
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 379 ACGAGATCAAGTCTGCCTTGGAAAATGAATGTCCTGAAACAGTTTCTTGCGCCGATCTAT 438
Query 410 TGGCTCTCGTTGCTAGAGACTCCATTGTTATTTGTGGTGGACCTAGTTGGGAAGTAAATC 469
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 439 TGGCTCTCGTTGCTAGAGACTCTATTGTTATTTGTGGTGGACCTAGTTGGGAAGTATATC 498
Query 470 TTGGAAGAAGAGATGCAAGGGAAGCAAGTTTGAGTGGTTCCATGGAGAACATTCCTTCTC 529
||||||||||||||||||| |||||||| |||| |||||||||||| |||||||||||||
Sbjct 499 TTGGAAGAAGAGATGCAAGAGAAGCAAGCTTGATTGGTTCCATGGAAAACATTCCTTCTC 558
Query 530 CCGAGTCCACGTTACAAACAATTGTCAAC-ATGTTCAACCTTCAAGGACTTGATCTCACC 588
||||||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||||
Sbjct 559 CCGAGTCCACGTTACAAACAATTCTCA-CTATGTTCAACTTTCAAGGACTTGATCTCACC 617
Query 589 GATCTTGTTGCCCTCTTAGGGAGTCACACGATAGGAAACTCGAGGTGTATTGGTTTCCGA 648
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 618 GATCTTGTTGCCCTCTTAGGGAGTCACACGATAGGAAACTCAAGGTGTATTGGTTTCCGA 677
Query 649 CAAAGGTTATACAACCATACTGGAAACAACGATCCCGACCAGACTTTGAATCAAGACTAC 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 CAAAGGTTATACAACCATACTGGAAACAACGATCCCGACCAGACTTTGAATCAAGACTAC 737
Query 709 GCCTCTATGTTGCAGCAGGGATGTCCGATTTCGGGCAATGACCAGAACCTCTTTAATCTT 768
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 738 GCCTCTATGTTGCAGCAGGGATGTCCGATTTCGGGCAACGACCAGAACCTCTTTAATCTT 797
Query 769 GACTAAGTGACGCCAACTAAGTTTGACAATTACTACTTCAAGAATCTGGTGAACTTTAGA 828
||||| |||||||| |||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 798 GACTATGTGACGCCGACTAAGTTTGACAATTACTACTACAAGAATCTTGTGAACTTTAGA 857
Query 829 GGACTCTTGAGTTCTGATGAGATTTTGTTCACGCAAAGCAGT-GAGACCATGGAGATGGT 887
||||||||||||||||||||||| |||||||||||||||| | ||||| |||||||||||
Sbjct 858 GGACTCTTGAGTTCTGATGAGATATTGTTCACGCAAAGCA-TAGAGACTATGGAGATGGT 916
Query 888 CAAGTTTTACGCGGAGAATGAGGAAGCCTTCTTTGAGCAGTTCGCGAAGTCGATTGTGAA 947
||||| ||||||||||||||||| ||| |||||||||||||| ||||||||||| |||||
Sbjct 917 CAAGTATTACGCGGAGAATGAGGGAGCGTTCTTTGAGCAGTTTGCGAAGTCGATGGTGAA 976
Query 948 GATGGGGAACATCTCACCGTTGACGGGGACCGATGGTGAGATCAGGAGGATCTGCCGGAG 1007
|||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct 977 GATGGGGAACATCTCACCGTTGACGGGGACGGATGGTGAGATCCGGAGGATATGCCGGAG 1036
Query 1008 GGTTAACCATGATTTTTGA 1026
||||||||||||| |||||
Sbjct 1037 GGTTAACCATGATGTTTGA 1055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5