BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898023
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51230.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1046 0.0
> AT3G51230.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Chalcone-flavanone isomerase family protein (TAIR:AT5G66230.1);
Has 39 Blast hits to 39 proteins in 11 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr3:19023221-19024351 REVERSE LENGTH=986
Length=986
Score = 1046 bits (566), Expect = 0.0
Identities = 738/816 (90%), Gaps = 32/816 (4%)
Strand=Plus/Plus
Query 1 ATGGAGACTCCATCATCA-ACAAGAAGGGTCACTAGATCACAGGCTCTCTCTGCAATCAA 59
|||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||
Sbjct 67 ATGGAGACTCCATCATCAGCCAA-AAGGGTCACTAGATCACAGGCTATCTCTGCAATCAA 125
Query 60 CAACTCTGATTCTGGCTTCAAA-TTCCCCTTTTCATCATCAAA-AAATACAGAGGATTCA 117
| |||||||||||| ||||||| || ||||||||||||||||| ||| |||||||||||
Sbjct 126 CGACTCTGATTCTGACTTCAAAGTT-CCCTTTTCATCATCAAACAAA-ACAGAGGATTCG 183
Query 118 AGCATCGGTCAAAGAAAGAACATCAAAGCACAAGAAGACAGGTCTGCACTAATCGACATA 177
|||||| | | |||| | |||| |||||||||||||||||||||||||||||
Sbjct 184 AGCATC-G---ACCAAAG---A--AAAG---AAGAAGACAGGTCTGCACTAATCGACATA 231
Query 178 ACCAATGACTCACCAATCATTGGTCTAGCGATGCAGACACCTCCTTCAGGGTTCATGGTT 237
||||| |||||||| ||| | |||||| ||||||||||||||||||||||||||||||||
Sbjct 232 ACCAACGACTCACCGATCGTGGGTCTAACGATGCAGACACCTCCTTCAGGGTTCATGGTT 291
Query 238 AAAAGGAAAAGCAGCAGAATCAAGAACACGCCTGGATCTGGTGAAGCCCTTTTGAGAGGA 297
|| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 292 AAGAGAAAAAGCAGCAGAATCAAGATCACGCCTGGATCTGGTGAAGCCCTTTTGAGAGGA 351
Query 298 CAAGTCAAAACCCTCTTACACAAGGTTGAAGAAGGAAGAGAGGTTATCCATTCAATAGAG 357
|||||||||||||| |||||||||||||||||||||| |||| |||||||||||||| ||
Sbjct 352 CAAGTCAAAACCCTTTTACACAAGGTTGAAGAAGGAACAGAGCTTATCCATTCAATAAAG 411
Query 358 ACTCGTCCTTTTATCCATCTCGTCACTTCTCCAATGAGACTTCTCGCTCCAACTCCAGCA 417
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 412 ACTCGTCCTTTTATCCATCTGGTCACTTCTCCAATGAGACTTCTCGCTCCAACTCCAGCA 471
Query 418 AATACTCCTCAATTTCCAAACTTTTCAGATAATGATGTGAAGATTACGATCGCATCACCG 477
|||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||||| |||
Sbjct 472 AATACTCCCCAATTTCCAAACTTTTCAGATGATGATGTCAAGATTAAGATCGCATCTCCG 531
Query 478 ATTGTTGCTGGACAA-TTGAGAACCCCTCAGATATTTGAAGAGAAAGAAGAGAAGAGTAT 536
|||||||||||| || ||||||||| ||||||||| ||||||||||||||| ||||||||
Sbjct 532 ATTGTTGCTGGA-AACTTGAGAACCTCTCAGATATCTGAAGAGAAAGAAGACAAGAGTAT 590
Query 537 GAGCGTAACTCGTTCTTTGCTGTTTGACTTCACGGACAAGTTAGCATCATG-Ggaagaag 595
|||| ||||||||||||| |||||||||||||| ||||||| ||| | ||| ||||||||
Sbjct 591 GAGCATAACTCGTTCTTTACTGTTTGACTTCACCGACAAGTCAGCTTTATGAGGAAGAAG 650
Query 596 aagaagaagaagaaga-g--g------ttgatgggttgtgtgaaggaatgaagaagatga 646
|||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 651 AAGAAGAAGAAGAAGAAGAAGAGGAGGTTGATGGGTTGTGTGAAGGAATGAAGAAGATGA 710
Query 647 gtgtagagaC-AACTCACGCTGAGTTTGCAGGGAAACATAACAGATTTGTGTACAACAGT 705
||||||||| || ||| ||||| |||||||||||||||||||||||| | |||||||||
Sbjct 711 ATGTAGAGACGAA-TCAAGCTGAATTTGCAGGGAAACATAACAGATTTCTTTACAACAGT 769
Query 706 GAAGATGAGGAGATCATAGAGGCTAAAGAAGTGTTGCACTTGAAAGGGATTCCAACTCCT 765
||||| || |||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 770 GAAGACGATGAGATCGTAGAGGCTAAAGAAGTGTTGCATTTGAAAGGGATTCCAACTCCG 829
Query 766 AGAGGAAAGCATTTCAGGTTTGCTACTAAAGAAGAA 801
|||||||||||||| |||||||||||| ||||||||
Sbjct 830 AGAGGAAAGCATTTTAGGTTTGCTACTCAAGAAGAA 865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5