BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898048
Length=2193
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51490.2 | Symbols: TMT3 | tonoplast monosaccharide transpor... 3509 0.0
AT4G35300.1 | Symbols: TMT2 | tonoplast monosaccharide transpor... 182 2e-44
> AT3G51490.2 | Symbols: TMT3 | tonoplast monosaccharide transporter3
| chr3:19104885-19107797 REVERSE LENGTH=2582
Length=2582
Score = 3509 bits (1900), Expect = 0.0
Identities = 2117/2218 (95%), Gaps = 29/2218 (1%)
Strand=Plus/Plus
Query 1 ATGAGGAGTGTAGTGTTTGTTGCTTTAGCCGCTGCCATAGGGAATATGTTGCAGGGCTGG 60
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 236 ATGAGGAGTGTAGTGCTTGTTGCTTTAGCCGCTGCGATAGGGAATATGTTGCAGGGCTGG 295
Query 61 GACAATGCCACCATTGCTGGAGCTGTAATTTATATAAAGAAAGAATTTCATTTGGAGAAA 120
||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 296 GACAATGCCACCATTGCAGGAGCTGTAATTTACATTAAGAAAGAATTTCATTTGGAGAAA 355
Query 121 GAACCAAAGATAGAAGGACTGATCGTAGCAATGTCTCTCATTGGAGCCACTTTGATCACA 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 356 GAACCAAAGATAGAAGGACTGATCGTGGCAATGTCTCTCATTGGAGCCACTTTGATCACA 415
Query 181 ACTTTCTCTGGTCCTGTCTCTGACAAAGTAGGAAGGCGTTCCATGCTTATACTCTCCTCT 240
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 416 ACTTTCTCTGGTCCTGTCTCTGACAAAGTAGGAAGGCGATCAATGCTTATACTCTCCTCT 475
Query 241 GTTCTCTATTTTCTGAGTAGCATCGTTATGTTTTGGTCTCCCAATGTCTACGTTCTCCTT 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 476 GTTCTCTATTTTCTGAGTAGCATTGTTATGTTTTGGTCTCCCAATGTCTACGTTCTCCTT 535
Query 301 TTCGCAAGGCTGCTTGATGGCTTTGGGATCGGTCTAGCTGTCACTCTCGTCCCAATCTAC 360
||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 536 TTCGCAAGGCTTCTTGATGGTTTTGGGATCGGTTTAGCTGTCACTCTCGTCCCAATCTAC 595
Query 361 ATCTCTGAGACTGCACCTTCTGAGATCAGAGGATTACTCAACACTTTCCCGCAGTTCTGT 420
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 596 ATCTCTGAGACCGCACCTTCTGAGATCAGAGGATTACTCAACACTTTCCCGCAGTTTTGT 655
Query 421 GGATCTGGTGGGATGTTTTTGTCATATTGTCTTGTGTTTGGGATGTCGCTTCAAGAATCA 480
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 656 GGATCCGGTGGGATGTTTTTGTCGTATTGTCTTGTGTTTGGGATGTCGCTTCAAGAATCA 715
Query 481 CCGAGCTGGAGGCTGATGCTTGGTGTTTTGTCAATTCCGTCCATTGCCTACTTTGTACTT 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CCAAGCTGGAGGCTGATGCTTGGTGTTTTGTCAATTCCGTCCATTGCCTACTTTGTACTT 775
Query 541 GCGGCTTTCTTCTTGCCTGAATCTCCCAGGTGGCTTGTCAGCAAAGGCCGGATGGATGAA 600
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 776 GCGGCTTTCTTCTTGCCTGAATCTCCAAGGTGGCTTGTCAGCAAAGGCCGTATGGATGAA 835
Query 601 GCTAGACAGGTTCTGCAGAGACTCCGTGGCAGAGAAGATGTTTCAGGCGAGCTTGCTCTG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GCTAGACAGGTTCTGCAGAGACTCCGTGGCAGAGAAGATGTTTCAGGCGAGCTTGCTCTG 895
Query 661 CTGGTGGAAGGGCTTGGGGTGGGAAAAGACACGTCGATAGAAGAATATGTGATTGGACCG 720
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CTGGTTGAAGGGCTTGGGGTGGGAAAAGACACGTCGATAGAAGAATATGTGATTGGACCA 955
Query 721 GACAACGAAGAAAGCGAGGGTGGGCATGAGCTGCCGAGGAAAGATCAGATAAAACTATAC 780
|||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 956 GACAACGAGGAAAACGAGGGTGGAAATGAACTGCCGAGGAAAGATCAGATAAAACTATAT 1015
Query 781 GGTCCAGAGGATGGACAGTCATGGATGGCTAAGCCAGTGAAAGGACAGAGTTCTCTCGCA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GGTCCAGAGGATGGACAGTCATGGATGGCTAAGCCAGTGAAAGGACAGAGTTCTCTCGCA 1075
Query 841 TTGGCGTCCCGAC-AGAGCAGCATGTTACCGCGTGGCGGATCCCTCATGGACCCACTTGT 899
||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TTGGCTTCCCGACAAG-GCAGCATGTTACCGCGTGGCGGATCCCTCATGGACCCACTTGT 1134
Query 900 CACTCTCTTTGGTAGCATTCATGAAAAACTCCCTTCTGAAAACATGAACGCATCATCCCG 959
|||||||||||||||||||||||| || |||||||| || ||||||||||||||||||||
Sbjct 1135 CACTCTCTTTGGTAGCATTCATGAGAATCTCCCTTCCGAGAACATGAACGCATCATCCCG 1194
Query 960 CAGCATGCTCTTCCCCAATATGGGAAGTATACTGGGAATGATGGGAAGACAGGAGTCCCA 1019
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1195 CAGCATGCTCTTCCCCAATATGGGAAGTATACTGGGAATGATGGGAAGGCAGGAGTCCCA 1254
Query 1020 GTGGGATCCAGAGAGAAACAATGAAGATAGCTCTGACCAAGATGAAAACTTGAACAGTCC 1079
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1255 GTGGGATCCAGAGAGAAACAATGAAGATAGTTCTGACCAAGATGAAAACTTAAACAGTCC 1314
Query 1080 TCTGCTTTCTCCGCCAACCACGTCTGAGCCGGATGACTACCACCAGCGGACCGTTGGTAC 1139
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1315 TCTGCTTTCTCCGCAAACCA---CTGAGCCGGATGACTACCACCAGCGGACCGTTGGTAC 1371
Query 1140 CATGCAGAGGCGACAGAGCAGCTTGTTTATGGCAAACGTGGGTGAGACAGCGACAGCTAC 1199
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1372 CATGCATAGGCGACAGAGCAGCTTGTTTATGGCAAACGTGGGTGAGACAGCGACGGCTAC 1431
Query 1200 AAGCATAGGCGGTGGATGCCAATTGGCGTGGAAGTATAACGACAAGGTTGGTGCAGATGG 1259
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1432 AAGCATAGGCGGTGGATGGCAATTGGCGTGGAAGTATAATGACAAGGTTGGTGCAGATGG 1491
Query 1260 TAAGAGAGTCAATGGAGGGTTACAGAGAATGTATATTCACGAGGAAACCGCCAACAACAA 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 TAAGAGAGTCAATGGAGGGTTACAGAGAATGTATATTCACGAGGAAACCGCCAACAACAA 1551
Query 1320 CACCAACAACATTCCTTTTTCGCGACGTGGATCACTTCTCTCCTTCCATCCAGAAGCTGA 1379
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 1552 CACCAACAACATTCCTTTTTCGCGACGTGGATCACTTCTCTCCTTCCACCCAGAGGGTGA 1611
Query 1380 TGGTCATGATCAGGTGAATGGATACGTTCAGGCTGCTGCACTTGTGAGCCAAGCTTCTAT 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1612 TGGTCATGATCAGGTGAATGGATACGTTCAGGCTGCTGCACTTGTGAGCCAAGCTTCGAT 1671
Query 1440 GATGCCAGGAGGTAAAGGCGAGACTGCAATGTTGCCAAAAGAGGTCAAGGATAGTCCAGG 1499
|||||||||||||||||||||||| |||||||||||||| ||||| |||||| |||||||
Sbjct 1672 GATGCCAGGAGGTAAAGGCGAGACCGCAATGTTGCCAAAGGAGGTTAAGGATGGTCCAGG 1731
Query 1500 CTGGAGGGAGCTGAAAGAACCAGGGGTTAAGAGAGCTTTGATGGTTGGAGTTGGGCTTCA 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 CTGGAGGGAGCTGAAAGAACCAGGGGTTAAGAGAGCTTTGATGGTTGGAGTTGGGCTTCA 1791
Query 1560 GATACTGCAACAGTTTGCAGGAATAAATGGAGTGATGTATTATACACCTCAAATATTGGA 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 GATACTGCAACAGTTTGCAGGAATAAATGGAGTGATGTATTATACACCTCAAATATTGGA 1851
Query 1620 AGAAACAGGAGTGTCAAGTCTTTTGACAAACCTTGGAATAAGTGCAGAGTCTGCATCGCT 1679
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 AGAAACAGGTGTGTCAAGTCTTTTGACAAACCTTGGAATAAGTGCAGAGTCTGCATCGCT 1911
Query 1680 TCTCATAAGCGCCTTAACCACACTCTTGATGCTTCCCTGCATTCTTGTTTCCATGAGGTC 1739
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1912 TCTCATAAGCGCCTTAACCACACTCTTGATGCTTCCCTGCATTCTTGTCTCCATGAGGTT 1971
Query 1740 --TC--TG-A--TG-C------T-T-T----C---C-ACTATCCCCATTCTAATACTGTC 1775
| || | || | | | | | | |||||||||||||||||||||||
Sbjct 1972 AATGGATGTAACTGGCAGAAGGTCTCTGATGCTTTCGACTATCCCCATTCTAATACTGTC 2031
Query 1776 GCTGGTAACACTGGTGATAGGAAGCTTGGTGAAGCTTGGAGGTACAACAAATGCGTTGAT 1835
||||||||||||||||||||||||||| ||||| ||||||||| ||| ||| ||||||||
Sbjct 2032 GCTGGTAACACTGGTGATAGGAAGCTTAGTGAATCTTGGAGGTTCAATAAACGCGTTGAT 2091
Query 1836 ATCGACAGCTAGTGTTACGGTGTACCTAAGCTGTTTCGTGATGGGTTTTGGGGCAATCCC 1895
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2092 ATCGACAGCAAGTGTTACGGTGTACCTAAGCTGTTTCGTGATGGGTTTTGGGGCAATTCC 2151
Query 1896 AAACATCCTATGCTCAGAGATCTTCCCTACCTCTGTACGTGGTCTCTGCATCACCATCTG 1955
||||||||| ||||||||||| |||||||| ||||| || ||||||||||||||||| ||
Sbjct 2152 AAACATCCTCTGCTCAGAGATATTCCCTACTTCTGTGCGCGGTCTCTGCATCACCATATG 2211
Query 1956 TGCCCTCACTTTCTGGATCTGTGACATAATCGTCACTTACACTCTCCCAGTCATGCTCAA 2015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2212 TGCCCTCACTTTCTGGATCTGTGACATAATCGTCACTTACACTCTCCCAGTCATGCTCAA 2271
Query 2016 ATCCATTGGCATTGCGGGAGTCTTTGGCATTTATGCAATCGTCTGTGCTGTTGCATGGGT 2075
|||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 2272 ATCCATTGGCATCGCAGGAGTCTTTGGCATTTATGCAATCGTCTGTGCTGTCGCGTGGGT 2331
Query 2076 TTTTGTGTACCTCAGGGTACCAGAGACAAAGGGAATGCCCCTTGAAGTTATCTCCGAGTT 2135
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2332 TTTTGTGTACCTCAAGGTACCAGAGACAAAGGGAATGCCCCTTGAAGTTATCTCTGAGTT 2391
Query 2136 CTTCTCCGTCGGTGCAAAACAGCAAGACGCTGGAGCTTCATTTCTCTCTGATGGATGA 2193
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2392 CTTCTCCGTCGGTGCAAAACAGCAAGACGCTGCAGCTTCATTTCTCTCTGATGGATGA 2449
> AT4G35300.1 | Symbols: TMT2 | tonoplast monosaccharide transporter2
| chr4:16796256-16799553 REVERSE LENGTH=2590
Length=2590
Score = 182 bits (98), Expect = 2e-44
Identities = 220/277 (79%), Gaps = 16/277 (6%)
Strand=Plus/Plus
Query 1870 TTCGTGATGGGTTTTGGGGCAAT-C-CCAAACATCCTATGCTCAGAGATCTTCCCTACCT 1927
||||||||||| ||| || | | | ||||||||||| || |||||||| || || | ||
Sbjct 2103 TTCGTGATGGG-TTTCGGTC-CTGCTCCAAACATCCTCTGTTCAGAGATTTTTCC-AACT 2159
Query 1928 C-TGTACGTGGTCTCTGCATCACCATCTGTGCCCTCACTTTCTGGATCTGTGACATAATC 1986
| || || || |||||||| ||||||| || ||||| |||||||||||||||||||||
Sbjct 2160 CGAGTCCGCGGAATCTGCATCGCCATCTGCGCACTCACCTTCTGGATCTGTGACATAATC 2219
Query 1987 GTCACTTACACTCTCCCAGT-CATGCTCAAATCCATTGGCATT-GCGGGAGTCTTTGGCA 2044
|||||||||| |||||| || | |||||||||||||||| | | || || || ||||| |
Sbjct 2220 GTCACTTACAGTCTCCCCGTGC-TGCTCAAATCCATTGG-ACTAGCTGGTGTGTTTGGAA 2277
Query 2045 TTTATGCAATCGTCTGT-GC-TGTTGCATGGGTTTTTGTGTACCTCAGGGTACCAGAGAC 2102
| || |||||||| ||| || | || ||||||| ||||||| | | | || || || ||
Sbjct 2278 TGTACGCAATCGTATGTTGCAT-TT-CATGGGTCTTTGTGTTCATTAAAGTCCCGGAAAC 2335
Query 2103 -AAAGGGAATGCCCCTTGAAGTTATCTCCGAGTTCTT 2138
||||| | |||| |||||||| ||| | ||||||||
Sbjct 2336 TAAAGGCA-TGCCACTTGAAGTCATCACAGAGTTCTT 2371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108784581015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5