BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898070
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51730.1 | Symbols: | saposin B domain-containing protein |... 1020 0.0
> AT3G51730.1 | Symbols: | saposin B domain-containing protein
| chr3:19186666-19188691 FORWARD LENGTH=1100
Length=1100
Score = 1020 bits (552), Expect = 0.0
Identities = 613/643 (95%), Gaps = 2/643 (0%)
Strand=Plus/Plus
Query 1 ATGGGTCTAAAAGCTGGAACCTTTGTGCTTCTCTTGTTGGGTTTGATCTTGGTTTCTGAC 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 204 ATGGGTCTTAAAGCTGGAACCTTTGTGCTTCTCTTGTTGGGTTTGATCTTGGTCTCTGAC 263
Query 61 GCTAGATCTTTTGTTGACTCCACCCTCTCAGAAAAAGTTTCCAATAAGGAAGACGTTTGC 120
||||||||||| |||||||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct 264 GCTAGATCTTTCGTTGACTCCACCATCTCAGAGAAAGTTTCCAACAAGGAAGACGTTTGC 323
Query 121 ACTCTGTGTGAGGAATATGTTACTGAAGCTCTCAGCTACCTTGAGAAAAATGTCACACAA 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 324 ACTCTGTGTGAGGAATATGTTACTGATGCTCTCAGCTACCTTGAGAAAAATGTCACACAA 383
Query 181 GCGGAGATTATTGAGGATCTTCATGATCGGTGTTCCCAATTGCGCGGATTTTCGCAGCAG 240
|||||||| || || |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 384 GCGGAGATCATCGAAGATCTTCATGATCGGTGTTCCCAATTGCGCGGATATTCGCAGCAG 443
Query 241 TGCATAACTTTGGTTGATTACTATGTTCCTCTCTTCTTCTTACAACTGGAGTCGTTTCAA 300
||||||| |||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 444 TGCATAAGTTTGGTGGATTACTATGTTCCTCTTTTCTTCTTACAACTAGAGTCGTTTCAA 503
Query 301 CCTCACTATTTCTGCAAGAGGATGAATCTTTGTGGCAAAGTTGTAGCTCTTGTCGAAGAA 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 CCTCATTATTTCTGCAAGAGGATGAATCTTTGTGGCAAAGTTGTAGCTCTTGTCGAAGAA 563
Query 361 GTC-CGTCAGGACAGTTGCGGTGTATGCCACAGGACTGTTTCAGAGATTCTCATCAAACT 419
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 G-CTCGTCAGGACAGTTGCGGTGTATGCCACAGGACTGTTTCAGAGATTCTCATCAAACT 622
Query 420 ACAAGATCCCGATACACAGCTGGATATCGTTGAACTGCTTCTCAAGGGATGTAAATCGCT 479
||||||||| || ||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 623 ACAAGATCCTGACACACAGCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCT 682
Query 480 CAAGAACTACGAGAAGAAGTGCAAGACGTTGGTGTTCGAATATGGACCTCTGATCCTCGT 539
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 683 CAAGAACTACGAGAAGAAGTGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGT 742
Query 540 AAATGCAGAGGAATTCCTAGTGAAAAACGACGTCTGCACACTCTTACGCGCATGTCCGGC 599
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 743 AAATGCAGAGGAATTCCTAGTGAAAAACGACGTCTGCACACTCTTGCGCGCATGCCCCCC 802
Query 600 TGAGAAATTGGTTCTAAGGCAGCCGGAGTTGGCGGATTCTTGA 642
|||||||| |||||||||||||||||||||||| |||||||||
Sbjct 803 TGAGAAATCGGTTCTAAGGCAGCCGGAGTTGGCTGATTCTTGA 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30994468699
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5