BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898078
Length=459
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51810.1 | Symbols: ATEM1, GEA1, AT3, EM1 | Stress induced p... 649 0.0
> AT3G51810.1 | Symbols: ATEM1, GEA1, AT3, EM1 | Stress induced
protein | chr3:19214748-19215831 FORWARD LENGTH=899
Length=899
Score = 649 bits (351), Expect = 0.0
Identities = 424/460 (92%), Gaps = 2/460 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCAAAGCAACTTAGCCGAGAAGAGCTCGATGAGAAGGCGAAGCAAGGAGAGACC 60
||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 71 ATGGCGTCAAAGCAACTGAGCAGAGAAGAGCTTGATGAGAAGGCGAAGCAAGGAGAGACC 130
Query 61 GTCGTCCAAGGTGGCACCGGCGGCCACAGCCTCGAAGCCCAAGAGCATCTTGCTGAAGGA 120
||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 131 GTCGTCCCAGGTGGCACCGGTGGCCACAGCCTCGAAGCTCAAGAGCATCTTGCTGAAGGA 190
Query 121 AGGAGCAAAGGAGGAG-AGACGAGGAAAGAGCAGCTAGGGCACGAGGGTTATCAGGAGAT 179
|||||||| ||||| | |||||||||| ||||||||||| || || ||||||||||||||
Sbjct 191 AGGAGCAAGGGAGG-GCAGACGAGGAAGGAGCAGCTAGGACATGAAGGTTATCAGGAGAT 249
Query 180 GGGACATAAAGGAGGAGAAGCGAGGAAGGAGCAGCTAGGGCAGGAGGGTTATCAGGAAAT 239
|| || ||||| ||||| ||||||||||||||| ||||||| |||||||||||||| ||
Sbjct 250 CGGTCACAAAGGTGGAGAGGCGAGGAAGGAGCAGTTAGGGCACGAGGGTTATCAGGAGAT 309
Query 240 GGGACATAAAGGTGGAGAGACGAGGAAGGAGCAGCTAGGGCACGAGGGCTATCAGGAGAT 299
||| || |||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 310 GGGTCACAAAGGTGGAGAGGCGAGGAAGGAGCAGCTAGGGCACGAGGGTTATCAGGAGAT 369
Query 300 GGGACGTAAAGGAGGAGAGGCGAGAAAGGAGCAGCTAGGTCACGAGGGTTATCAGGAGAT 359
||||| ||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct 370 GGGACACAAAGGAGGAGAGGCGAGGAAGGAGCAGCTAGGGCACGAGGGTTATAAGGAGAT 429
Query 360 GGGGCGCAAAGGAGGACTCAGTACAATGGAAAAATCTGGTGGAGAGCGTGCCGAGGAAGA 419
||| || ||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 430 GGGACGTAAAGGAGGACTCAGTACGATGGAAAAATCTGGTGGAGAGCGTGCGGAGGAAGA 489
Query 420 AGGGATTGAGATCGACGAGTCCAAGTTCACCAACAAGTGA 459
||||||||||||||| ||||| ||||||||||||||||||
Sbjct 490 AGGGATTGAGATCGATGAGTCAAAGTTCACCAACAAGTGA 529
Score = 268 bits (145), Expect = 2e-71
Identities = 175/190 (92%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 126 CAAAGGAGGAGAGACGAGGAAAGAGCAGCTAGGGCACGAGGGTTATCAGGAGATGGGACA 185
|||||| |||||| ||||||| |||||| |||||||||||||||||||||||||||| ||
Sbjct 256 CAAAGGTGGAGAGGCGAGGAAGGAGCAGTTAGGGCACGAGGGTTATCAGGAGATGGGTCA 315
Query 186 TAAAGGAGGAGAAGCGAGGAAGGAGCAGCTAGGGCAGGAGGGTTATCAGGAAATGGGACA 245
||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 316 CAAAGGTGGAGAGGCGAGGAAGGAGCAGCTAGGGCACGAGGGTTATCAGGAGATGGGACA 375
Query 246 TAAAGGTGGAGAGACGAGGAAGGAGCAGCTAGGGCACGAGGGCTATCAGGAGATGGGACG 305
||||| |||||| |||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 376 CAAAGGAGGAGAGGCGAGGAAGGAGCAGCTAGGGCACGAGGGTTATAAGGAGATGGGACG 435
Query 306 TAAAGGAGGA 315
||||||||||
Sbjct 436 TAAAGGAGGA 445
Score = 185 bits (100), Expect = 3e-46
Identities = 120/130 (92%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 126 CAAAGGAGGAGAGACGAGGAAAGAGCAGCTAGGGCACGAGGGTTATCAGGAGATGGGACA 185
|||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 316 CAAAGGTGGAGAGGCGAGGAAGGAGCAGCTAGGGCACGAGGGTTATCAGGAGATGGGACA 375
Query 186 TAAAGGAGGAGAAGCGAGGAAGGAGCAGCTAGGGCAGGAGGGTTATCAGGAAATGGGACA 245
||||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||||
Sbjct 376 CAAAGGAGGAGAGGCGAGGAAGGAGCAGCTAGGGCACGAGGGTTATAAGGAGATGGGACG 435
Query 246 TAAAGGTGGA 255
|||||| |||
Sbjct 436 TAAAGGAGGA 445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21866470815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5