BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898127
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52220.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Kinase ph... 1158 0.0
> AT3G52220.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Kinase
phosphorylation domain (InterPro:IPR019315); Has 8882 Blast
hits to 4920 proteins in 346 species: Archae - 10; Bacteria
- 184; Metazoa - 3955; Fungi - 1221; Plants - 712; Viruses -
24; Other Eukaryotes - 2776 (source: NCBI BLink). | chr3:19369362-19371074
REVERSE LENGTH=1026
Length=1026
Score = 1158 bits (627), Expect = 0.0
Identities = 685/714 (96%), Gaps = 0/714 (0%)
Strand=Plus/Plus
Query 1 ATGTATCATCCAACGAGGGGAGGTGTTCGCGGTGGTCGAGATCAATTCAGTTGGGATGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 ATGTATCATCCAACGAGGGGAGGTGTTCGCGGTGGTCGAGATCAATTCAGTTGGGATGAA 154
Query 61 GTCAAGGCTGATAAATATAGGGAGAACTATTTGGGTCACAGTATCAAAGCCCCTGTTGGT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 GTCAAGGCTGATAAATATAGGGAGAACTATTTGGGTCACAGTATCAAAGCCCCTGTTGGA 214
Query 121 AGATGGCAAAAAGGTAAAGATCTTCACTGGTATGCTAGAGATAAAAAGCAAAAGGGTTCT 180
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 215 AGATGGCAAAAAGGTAAAGATCTTCATTGGTATGCTAGAGATAAAAAGCAAAAGGGTTCC 274
Query 181 GAGATGGATGCTATGAAAGAGGAGATTCAAAGAGTTAAGGAACAAGAGGAACAGGCCATG 240
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 275 GAGATGGATGCTATGAAAGAAGAGATTCAAAGAGTTAAGGAACAAGAGGAGCAGGCCATG 334
Query 241 AGGGAGGCTCTTGGCTTGGCGCCAAAGTCCTCTACAAGACCACAAGGAAATCGCCTTGAT 300
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 335 AGGGAGGCTCTTGGCTTGGCACCAAAGTCCTCTACAAGGCCACAAGGAAATCGCCTTGAT 394
Query 301 AAGCAAGAGTTTACTGAACTTGTGAAGAGGGGTTCAACAGCAGAGGACTTGGGTGCAGGG 360
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 395 AAGCAAGAGTTTACTGAACTTGTGAAGAGGGGTTCGACAGCAGAGGACTTAGGTGCAGGG 454
Query 361 AACGCTGATGCTGTGTGGGTTCATGGCCTTGGCTATGCAAAAGCACCACGACCTTGGGAA 420
|| |||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||
Sbjct 455 AATGCTGATGCTGTGTGGGTTCACGGTCTTGGATATGCTAAAGCACCACGACCTTGGGAA 514
Query 421 GATCCGAGCACCCTTGCATCCTCTCAGAAAGAAGACGCAGAGCCTGCACGTTTGCCAGCA 480
||||||||||||||||||||||||||||||||||| ||||| | ||||| || ||||||
Sbjct 515 GATCCGAGCACCCTTGCATCCTCTCAGAAAGAAGATGCAGATTCAGCACGCTTACCAGCA 574
Query 481 GATACATCAGGGGTCAAAACTGTTGAAGATGGACCGGATGATGTTGAGAGGGACCAAAAG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 GATACATCAGGGGTCAAAACTGTTGAAGATGGACCGGATGATGTTGAGAGGGACCAAAAG 634
Query 541 AAGGATAGGCATGAGGAAAGGAAACCTGCAAAGAGAGAGAAGGAAGAGAGACATGATAGG 600
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 635 AAGGATAGGCGTGAGGAAAGGAAACCTGCAAAGAGAGAGAAGGAAGAAAGACATGATAGG 694
Query 601 CGTGACAAACGTGAAAGGCATGAGAAGCGACGCACTCGAGATTCAGATGATagaaagaag 660
||||| ||||| |||||||||||||||||| || |||| |||||||||||||||||||||
Sbjct 695 CGTGAAAAACGCGAAAGGCATGAGAAGCGAAGCGCTCGTGATTCAGATGATAGAAAGAAG 754
Query 661 cacaagaaagagaagaaggagaaaaagaGGAGGCATGACTCTGATTCTGATTGA 714
|||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 755 CACAAGAAAGAGAAGAAGGAGAAAAAAAGAAGGCATGACTCTGATTCTGATTGA 808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5