BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg898135

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G52270.1 | Symbols:  | Transcription initiation factor IIF, ...   510    3e-144


> AT3G52270.1 | Symbols:  | Transcription initiation factor IIF, 
beta subunit | chr3:19387180-19388944 REVERSE LENGTH=852
Length=852

 Score =  510 bits (276),  Expect = 3e-144
 Identities = 308/324 (95%), Gaps = 0/324 (0%)
 Strand=Plus/Plus

Query  70   GTCATTGATGATGCCAGAGGAATGCATATGAGGCCAATGCCAGAAATGATAATCCCAACC  129
            ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  529  GTCATTGATAATGCCAGAGGAATGCATATGAGGCCAATGCCAGGAATGATAATCCCAACC  588

Query  130  GCGGCTCCTGAAAAGAAGAAATTGACAAATAGGACATCAGAAATGAAGAGAACAAGAAGG  189
            |||||||| |||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct  589  GCGGCTCCGGAAAAGAAAAAATTGACGAACAGGACATCAGAAATGAAGAGAACAAGAAGG  648

Query  190  GACCGTAGAGAGATGGAAGAGGTCATGTTTAATCTCTTTGAAAGACAGTCAAATTGGACT  249
            ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct  649  GACCGTAGAGAGATGGAGGAGGTGATGTTTAATCTCTTTGAAAGACAATCAAATTGGACT  708

Query  250  CTGAGGCTGCTCATTCAGGAAACTGACCAACCAGAGCAATTCCTGAAAGACTTGCTGAGA  309
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct  709  CTGAGGCTGCTCATTCAGGAAACTGACCAGCCAGAGCAATTCCTGAAAGACTTGTTGAAA  768

Query  310  GATCTTTGCATATACAACAACAAAGGGAGCAACCAAGGAACTTATGAGCTGAAGCCTGAG  369
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  769  GATCTATGCATATACAACAACAAAGGGAGCAACCAAGGAACTTATGAGCTGAAGCCTGAA  828

Query  370  TACAAGAAAGCCACACAGGAATAG  393
            || ||||||||||| |||||||||
Sbjct  829  TATAAGAAAGCCACTCAGGAATAG  852



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18548799381


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5