BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg898136

Length=1167
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G52510.1 | Symbols:  | F-box associated ubiquitination effec...   163    3e-39


> AT3G52510.1 | Symbols:  | F-box associated ubiquitination effector 
family protein | chr3:19469652-19470378 REVERSE LENGTH=651
Length=651

 Score =  163 bits (88),  Expect = 3e-39
 Identities = 150/179 (84%), Gaps = 8/179 (4%)
 Strand=Plus/Plus

Query  500  TGCTTAGCATAGTTTGGGAGGTGGGCGGGGAA-AAGAG-AGTTCTCAAATCCGAGCATCA  557
            ||||| ||| ||||||||||||| ||  |||| | | | ||   | | ||||||||||||
Sbjct  77   TGCTTCGCAAAGTTTGGGAGGTGAGCAAGGAAGATGGGCAG--ATGAGATCCGAGCATCA  134

Query  558  AGTGTTGGTACTTGGTCCTGGAGCTTATTGGAGAAACACTCAAAGCA-C-CATCCCTCCT  615
            |||||||||||||||||||||||||||||||||||  ||| | |||| | | ||| ||||
Sbjct  135  AGTGTTGGTACTTGGTCCTGGAGCTTATTGGAGAAGTACTTATAGCAACGC-TCC-TCCT  192

Query  616  CCTCCTCATTGTCCTTACACACAAGGTTTCTCCATCAACGGTGTCTTGTATTATGGAGC  674
            ||||||||| |||||| | |||||||| |||||||||||||| | ||||| ||||||||
Sbjct  193  CCTCCTCATCGTCCTTTCTCACAAGGTATCTCCATCAACGGTATGTTGTACTATGGAGC  251



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 57278821845


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5