BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898140
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52320.1 | Symbols: | F-box and associated interaction doma... 1210 0.0
> AT3G52320.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:19403020-19404192 REVERSE LENGTH=1173
Length=1173
Score = 1210 bits (655), Expect = 0.0
Identities = 896/1009 (89%), Gaps = 30/1009 (3%)
Strand=Plus/Plus
Query 1 ATGGGATCGTCTTTAAGTCTTGTCGTGAGG----A--AAAAG-A-AAG-AGAAGAAGACT 51
||||| ||||||||| || ||| ||||||| | ||||| | ||| ||||||||||
Sbjct 1 ATGGGCTCGTCTTTATGTGTTGCCGTGAGGAAAAAGGAAAAGCAGAAGCAGAAGAAGACC 60
Query 52 TTGGTGATCTTACCAGAGATCACTGAAGAAATGTTGATCGATATCCTAATCAGATTGCCG 111
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTGGTGTTCTTACCAGAGATCCCTGAAGAAATGTTGATCGATATCCTAATCAGATTGCCG 120
Query 112 GCGAAATCTCTGATGAGATTTAAGTGTGTCTCAAAGATCTGGCTTTCCCTTATCACCTCT 171
|||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct 121 GCGAAATCTCTGATGAGATTCAAGTGCGTCTCAAAGCTCTGGCTTTCCCTTATCACCTCT 180
Query 172 CGATACTTCGCCAACCGTTTCCTAATTAAACCTTCACCATCACGTTGTTTTTTCGCGTAT 231
||||||||| ||||||||||| | ||||||| ||| || || ||||||| |||||||||
Sbjct 181 CGATACTTCACCAACCGTTTC-T--TTAAACCCTCATCACCAAGTTGTTTGTTCGCGTAT 237
Query 232 CTTGTGGATTGTGAAAATCAGAG-AAAGTGTTTGTTGCTCAAATCATCATC---ATCGAG 287
|||||||| | ||||||||||| ||| | |||||||| |||||||||| ||||||
Sbjct 238 CTTGTGGACAGGGAAAATCAGAGCAAA-TACCTGTTGCTCCAATCATCATCGTCATCGAG 296
Query 288 TCATGATCACTCGGACATATCTGTCTCTGTGATTGACCAACATTCGACCATGCCGGTAAT 347
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 297 GCATGATCACTCGGACACATCTGTCTCTGTGATTGACCAACATTCGACCATACCGATAAT 356
Query 348 GGGAGGCTACTTCGTGAACTCTGTTCGTGGTTTGTTGTGTTACAGAACTAGGAGAAGAGT 407
|||||||||||| |||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 357 GGGAGGCTACTTAGTGAACGCTGCTCGTGGTTTGTTGTGTTACAGAACTGGGAGAAGAGT 416
Query 408 GAAAGTTTGTAACCCTAGCACAAGGCAGGTTGTGGAATTTCCCCTAATGAGATCTAC--C 465
|||||||||||||||||||||||||||| |||||||||| ||| |||||||||||| |
Sbjct 417 GAAAGTTTGTAACCCTAGCACAAGGCAGATTGTGGAATTGCCCATAATGAGATCTAAGAC 476
Query 466 -AATGTGTGGCATTGTTTTGAACACGATCCTGTTCATGATAAATATAAAGTGCTTAGCTT 524
||||||||| |||| |||| ||| |||||| |||||||| |||| ||||||||||||||
Sbjct 477 TAATGTGTGGAATTGGTTTGGACATGATCCTTTTCATGATGAATACAAAGTGCTTAGCTT 536
Query 525 AGTTTGGGAGGTCAACAAGGAAGAGAGAGTAGTGAGATCAGAACATCAAGTGTTGGTACT 584
| |||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 537 ATTTTGGGAGGTCACCAAGGAACAGACAGTTGTGAGATCAGAACATCAAGTGTTGGTACT 596
Query 585 TGGTGATGGAGCTACATGGAGAAACACTCAAAGCCACAACGACACTCCTCATGGTCCTTT 644
||||| ||||||| |||||||||||||| |||||||| | ||||||||||| |||||||
Sbjct 597 TGGTGTTGGAGCTTCATGGAGAAACACTAAAAGCCAC--C-ACACTCCTCATCGTCCTTT 653
Query 645 TTACCCACACTCGCAAGGGATGACTATTAACGGTGTTTTGTATTATA-TAGCTTGGACTG 703
| | ||| |||| | ||||||||||||| | |||||||||||||||| | ||| ||||||
Sbjct 654 TCATCCATACTCACGAGGGATGACTATTGATGGTGTTTTGTATTATAGT-GCTCGGACTG 712
Query 704 ATG-AAGATAGAGGTGTGCTTGTGAGTTTTGACTTGAGTTCTGAAGAGTTCAATTTGATT 762
||| || ||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 713 ATGCAA-ATAGATGTGTCCTTATGAGTTTTGACTTAAGTTCTGAAGAGTTCAATTTGATT 771
Query 763 GAATTATTGCCCTATGAGAACTTGTCATGCACCAGTCTGATTAACTACCAAGGAAAAGTT 822
|||||| |||| |||||||| |||| |||||| || || ||||||||||||||||||
Sbjct 772 GAATTA---CCCTTTGAGAACTGGTCACGCACCATTCACATGAACTACCAAGGAAAAGTT 828
Query 823 GCTACTTGTGAAGATACGCTTCTTTCAAGTGATGGCATTGTGGATGTTTGTGTTCTTGAA 882
||||||||| || ||| || |||| ||||||||||| |||||||||||||||| ||||||
Sbjct 829 GCTACTTGTCAATATATGCGTCTTGCAAGTGATGGCTTTGTGGATGTTTGTGTCCTTGAA 888
Query 883 GATGCCGACAAGAGTCAGTGGTCGAACAAGAAGACTTTTGTTTTGCCTGTTTCTCAGATG 942
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 889 GATGCCGACAAGAGTCAGTGGTCGAACAAGAAGACTTTTGTTTTGCCTATTTCTCAGATG 948
Query 943 AATTTCGTCCATGGAGACCGGTTGGTGATTGGTGGCACTAGAGACAGTG 991
||||||||||||||||||||||||||| | |||| | ||||||||||||
Sbjct 949 AATTTCGTCCATGGAGACCGGTTGGTGGTGGGTGCCTCTAGAGACAGTG 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49078761619
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5