BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898141
Length=360
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02430.1 | Symbols: ATARFD1B, ARFD1B | ADP-ribosylation fact... 483 6e-136
AT1G02440.1 | Symbols: ATARFD1A, ARFD1A | ADP-ribosylation fact... 460 3e-129
> AT1G02430.1 | Symbols: ATARFD1B, ARFD1B | ADP-ribosylation factor
D1B | chr1:495050-496062 REVERSE LENGTH=698
Length=698
Score = 483 bits (261), Expect = 6e-136
Identities = 300/319 (94%), Gaps = 2/319 (1%)
Strand=Plus/Plus
Query 43 CAAGAAATAGCAGGGCTTGTGTTTGTAGTCGATAGCACGGATAGAGATCGAATAGAAGAG 102
||||||||||| ||||||||| |||||||||||||||| || |||||||||||||||||
Sbjct 256 CAAGAAATAGCGGGGCTTGTGCTTGTAGTCGATAGCACAGACAGAGATCGAATAGAAGAT 315
Query 103 GCCAAATATTTTCTTAACATGGTGATTGATGAGATACAAGGGAGTGTCCCGGACAATGTG 162
|| ||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 316 GCGAAAGATTTTCTTAATGCGGTGATTGATGAGATACAAGGGAGTGTACCGGACAATGTG 375
Query 163 GCTGTTCTTGTATATGGAAACAAGCATCAAGTTCCTGGTGCTATGTCTGCTTCTGAGATC 222
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 376 GCTGTTCTTGTATTTGGAAACAAGCATGAAGTTCCTGGTGCTATGTCTGCTTCTGAGATC 435
Query 223 AGTAACAAGCTTGATCTCACTTCTCTTCGTAC-TAAAAATTGGCAGAGAAACTGGCATGT 281
|||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 436 AGTAACAAGCTTGATCTCACTTCTCTTCGT-CAAAAAAACTGGCAGAGAAACTGGCATGT 494
Query 282 CCAGAGCTCATGTGCATTCTGTGGTGATGGTTTACATGAAGGACTCGACTGGCTGTTGAA 341
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 495 CCAGAGCTCATGTGCATTCTCTGGTGATGGTTTACATGAAGGACTCGACTGGCTGTTGAA 554
Query 342 AAATGCTGAAAGAATTTAA 360
||||||||||||||| |||
Sbjct 555 AAATGCTGAAAGAATGTAA 573
> AT1G02440.1 | Symbols: ATARFD1A, ARFD1A | ADP-ribosylation factor
D1A | chr1:496586-497479 REVERSE LENGTH=573
Length=573
Score = 460 bits (249), Expect = 3e-129
Identities = 295/318 (93%), Gaps = 0/318 (0%)
Strand=Plus/Plus
Query 43 CAAGAAATAGCAGGGCTTGTGTTTGTAGTCGATAGCACGGATAGAGATCGAATAGAAGAG 102
||||||||||| ||||||||| |||||||||| ||||||| ||||||| ||||||||||
Sbjct 256 CAAGAAATAGCGGGGCTTGTGCTTGTAGTCGACAGCACGGGCAGAGATCAAATAGAAGAG 315
Query 103 GCCAAATATTTTCTTAACATGGTGATTGATGAGATACAAGGGAGTGTCCCGGACAATGTG 162
| ||| ||||||||||| ||||||| |||||||||||||||||||| |||||||||| |
Sbjct 316 ACGAAAGATTTTCTTAACGTGGTGATCGATGAGATACAAGGGAGTGTACCGGACAATGCG 375
Query 163 GCTGTTCTTGTATATGGAAACAAGCATCAAGTTCCTGGTGCTATGTCTGCTTCTGAGATC 222
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 376 CCTGTTCTTGTATATGGAAACAAGCATGAAGTTCCTGGTGCTATGTCTGCTTCTGAGATC 435
Query 223 AGTAACAAGCTTGATCTCACTTCTCTTCGTACTAAAAATTGGCAGAGAAACTGGCATGTC 282
||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 436 AGTAACAAGCTAGATCTCACTAGTCTTCGTAAAAAAAACTGGCAGAGAAACTGGCATGTC 495
Query 283 CAGAGCTCATGTGCATTCTGTGGTGATGGTTTACATGAAGGACTCGACTGGCTGTTGAAA 342
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 496 CAGAGCTCATGTGCATTCTCTGGTGATGGTTTACATGAAGGACTCGACTGGCTGTTGAAA 555
Query 343 AATGCTGAAAGAATTTAA 360
|||||||||||||| |||
Sbjct 556 AATGCTGAAAGAATGTAA 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16889963664
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5