BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg898142 Length=852 Score E Sequences producing significant alignments: (Bits) Value AT3G52330.1 | Symbols: | F-box associated ubiquitination effec... 1186 0.0 > AT3G52330.1 | Symbols: | F-box associated ubiquitination effector family protein | chr3:19404955-19406207 REVERSE LENGTH=924 Length=924 Score = 1186 bits (642), Expect = 0.0 Identities = 785/852 (92%), Gaps = 18/852 (2%) Strand=Plus/Plus Query 7 TCGTCTTTGA-GTCTTGCCGTGAGGAAAAAGCAAAAGAAGGAGAGAATAATGGTCTTACC 65 |||||||| | |||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 85 TCGTCTTT-AGGTCTTGCCGTGAGGAAAAAGCAAAAGAAGGAGAGAATAGTGGTCGTACC 143 Query 66 CGAACTCTATGAGGACTTGTTGATCGAGATTCTGATCAGATTACCGATG-AATCT-TGCT 123 |||||||| |||||| ||||||| ||||||||||| ||||||||||| | ||| | || Sbjct 144 CGAACTCTGTGAGGAATTGTTGACCGAGATTCTGAGCAGATTACCGA-GCAAT-TATG-- 199 Query 124 CATCACGT-CGA-ATCATCGAGTCATGATGATCACTCTGTCTCTGTGATCGACCAAGATC 181 | | | | | | ||||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct 200 CGTTGCTTACTACATCATTGAGTCATGATGATCACTCTGTCTCTGTAATCGACCAAGATC 259 Query 182 TAAGCATGCCGATAATGGGAGGCTACTTCTTGAACGCTTGTCGTGGCTTGGTGTGTTTCA 241 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260 TAACCATGCCGATAATGGGAGGCTACTTCTTGAACGCTTGTCGTGGCTTGGTGTGTTTCA 319 Query 242 CAGTTGGGTCAAGAGTGCAAATTTGTAACCTTAACACAAGGCAGCTTGTGGAATTGCCGA 301 || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 320 CAATTGGGTCAAGAGTGCAAATTTGTAACCTTAACACAAGGCAGCTTGTGGACTTGCCGA 379 Query 302 TTATTCTAACACCTCAAGGAGGAGAAGATTACAATATATGGTACTATTTAGGACACGATC 361 |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 380 TTATTCTAACACCTAAAGGAGGAGAAAATTACAAGATATGGTACTATTTAGGACACGATC 439 Query 362 CTGTTCATGACGAATACAAAGTGCTTAGTTTCATTTGGAGGCACAATAGGGAGCAGTGGA 421 |||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| Sbjct 440 CTGTTCATGACGAATACAAAGTGCTTAGTTTCATTTGGAGGCACAACAAGGAG---TGGA 496 Query 422 AAGTGAGATCAGAACATCAGGTATTGATACTTGGAGCTGGAGCTTCATGGAAAAAGACTC 481 ||||||||||||||||||| || ||| ||||||||||| || |||||||||||||||||| Sbjct 497 AAGTGAGATCAGAACATCATGTGTTGGTACTTGGAGCTAGAACTTCATGGAAAAAGACTC 556 Query 482 AATGCCACATTCACCATTTTCCTTATTGTCAAGGGATTACCATCAACAGTGTTTTGTACT 541 ||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||| | Sbjct 557 AATGCCACATTCACCATCTTCCTTATTCTCAAGGGATTACCATCAACGGTGTTTTGTATT 616 Query 542 ATGGAGCTTGGACTGATGACAAGAAATGTGTGCTTATGAGTTTTGACTTGAGTTCTGAAG 601 ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 617 ATGGAGCTTGGACTGATGACAAG---TGTGTGCTTATGAGTTTTGACTTGACTTCTGAAG 673 Query 602 ATGTGCGTGTTTGGGTAATTGAAGATGTCAACAAGAGTCAATGGTCACACAAGAAGACTT 661 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 674 ATGTGGGTGTTTGGGTAATTGAAGATGTCAACAAGAGTCAATGGTCAGACAAGGAGACTT 733 Query 662 TTGTTTTGCCTACAGATTTCGCTCA-GACATATGACTTTGTGATGGGTGGCACAGGTCAC 720 |||||||||||||||||||| | || ||| |||| |||| |||||||||||||||||| | Sbjct 734 TTGTTTTGCCTACAGATTTCCCCCACGAC-TATGGCTTTATGATGGGTGGCACAGGTCGC 792 Query 721 AGTGGCAAAGGTAATGAGATAACTCGAAAGATTGAAATAAGTCCATCATTACTTGGTAGC 780 ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 793 AGTGGTAAGGGTAATGAGATAACTCGAAAGATCCAAATAAGTCCATCATTACTTGGTAGC 852 Query 781 TTTAAACAGACTGATTTGTTGTTGCCTACTCTCTGGGATGATACCGAGAGCATCATGTAC 840 |||||||||||||||| |||||| ||||| | ||||||||||| ||||||||||||||| Sbjct 853 TTTAAACAGACTGATTCCTTGTTGGCTACTTTATGGGATGATACTGAGAGCATCATGTAC 912 Query 841 TTGGAAACCTAA 852 |||||||||||| Sbjct 913 TTGGAAACCTAA 924 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41543639569 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5