BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898142
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52330.1 | Symbols: | F-box associated ubiquitination effec... 1186 0.0
> AT3G52330.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:19404955-19406207 REVERSE LENGTH=924
Length=924
Score = 1186 bits (642), Expect = 0.0
Identities = 785/852 (92%), Gaps = 18/852 (2%)
Strand=Plus/Plus
Query 7 TCGTCTTTGA-GTCTTGCCGTGAGGAAAAAGCAAAAGAAGGAGAGAATAATGGTCTTACC 65
|||||||| | |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 85 TCGTCTTT-AGGTCTTGCCGTGAGGAAAAAGCAAAAGAAGGAGAGAATAGTGGTCGTACC 143
Query 66 CGAACTCTATGAGGACTTGTTGATCGAGATTCTGATCAGATTACCGATG-AATCT-TGCT 123
|||||||| |||||| ||||||| ||||||||||| ||||||||||| | ||| | ||
Sbjct 144 CGAACTCTGTGAGGAATTGTTGACCGAGATTCTGAGCAGATTACCGA-GCAAT-TATG-- 199
Query 124 CATCACGT-CGA-ATCATCGAGTCATGATGATCACTCTGTCTCTGTGATCGACCAAGATC 181
| | | | | | ||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 200 CGTTGCTTACTACATCATTGAGTCATGATGATCACTCTGTCTCTGTAATCGACCAAGATC 259
Query 182 TAAGCATGCCGATAATGGGAGGCTACTTCTTGAACGCTTGTCGTGGCTTGGTGTGTTTCA 241
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TAACCATGCCGATAATGGGAGGCTACTTCTTGAACGCTTGTCGTGGCTTGGTGTGTTTCA 319
Query 242 CAGTTGGGTCAAGAGTGCAAATTTGTAACCTTAACACAAGGCAGCTTGTGGAATTGCCGA 301
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 320 CAATTGGGTCAAGAGTGCAAATTTGTAACCTTAACACAAGGCAGCTTGTGGACTTGCCGA 379
Query 302 TTATTCTAACACCTCAAGGAGGAGAAGATTACAATATATGGTACTATTTAGGACACGATC 361
|||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 380 TTATTCTAACACCTAAAGGAGGAGAAAATTACAAGATATGGTACTATTTAGGACACGATC 439
Query 362 CTGTTCATGACGAATACAAAGTGCTTAGTTTCATTTGGAGGCACAATAGGGAGCAGTGGA 421
|||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 440 CTGTTCATGACGAATACAAAGTGCTTAGTTTCATTTGGAGGCACAACAAGGAG---TGGA 496
Query 422 AAGTGAGATCAGAACATCAGGTATTGATACTTGGAGCTGGAGCTTCATGGAAAAAGACTC 481
||||||||||||||||||| || ||| ||||||||||| || ||||||||||||||||||
Sbjct 497 AAGTGAGATCAGAACATCATGTGTTGGTACTTGGAGCTAGAACTTCATGGAAAAAGACTC 556
Query 482 AATGCCACATTCACCATTTTCCTTATTGTCAAGGGATTACCATCAACAGTGTTTTGTACT 541
||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||| |
Sbjct 557 AATGCCACATTCACCATCTTCCTTATTCTCAAGGGATTACCATCAACGGTGTTTTGTATT 616
Query 542 ATGGAGCTTGGACTGATGACAAGAAATGTGTGCTTATGAGTTTTGACTTGAGTTCTGAAG 601
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 617 ATGGAGCTTGGACTGATGACAAG---TGTGTGCTTATGAGTTTTGACTTGACTTCTGAAG 673
Query 602 ATGTGCGTGTTTGGGTAATTGAAGATGTCAACAAGAGTCAATGGTCACACAAGAAGACTT 661
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 674 ATGTGGGTGTTTGGGTAATTGAAGATGTCAACAAGAGTCAATGGTCAGACAAGGAGACTT 733
Query 662 TTGTTTTGCCTACAGATTTCGCTCA-GACATATGACTTTGTGATGGGTGGCACAGGTCAC 720
|||||||||||||||||||| | || ||| |||| |||| |||||||||||||||||| |
Sbjct 734 TTGTTTTGCCTACAGATTTCCCCCACGAC-TATGGCTTTATGATGGGTGGCACAGGTCGC 792
Query 721 AGTGGCAAAGGTAATGAGATAACTCGAAAGATTGAAATAAGTCCATCATTACTTGGTAGC 780
||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 793 AGTGGTAAGGGTAATGAGATAACTCGAAAGATCCAAATAAGTCCATCATTACTTGGTAGC 852
Query 781 TTTAAACAGACTGATTTGTTGTTGCCTACTCTCTGGGATGATACCGAGAGCATCATGTAC 840
|||||||||||||||| |||||| ||||| | ||||||||||| |||||||||||||||
Sbjct 853 TTTAAACAGACTGATTCCTTGTTGGCTACTTTATGGGATGATACTGAGAGCATCATGTAC 912
Query 841 TTGGAAACCTAA 852
||||||||||||
Sbjct 913 TTGGAAACCTAA 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41543639569
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5