BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg898158

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G09370.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   346    1e-94


> AT5G09370.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr5:2909363-2910545 
REVERSE LENGTH=634
Length=634

 Score =  346 bits (187),  Expect = 1e-94
 Identities = 313/372 (84%), Gaps = 16/372 (4%)
 Strand=Plus/Plus

Query  1    ATGGCTTTCTTCTCCGCAGCAACATCTCTTCTCCTCCTAGTCCTCTCTGTTTCCTCTCCT  60
            ||||||| ||||||| |||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  71   ATGGCTTACTTCTCCACAGCGACATCTCTTCTCCTCCTCGTCCTCTCTGTTTCCTCTCCT  130

Query  61   TATGTTCATGGAAACATTATACCAGCCTCCGGGTGTACCCTTGTTG-TTCCCCTGTTCCC  119
            ||||||||||||  | |    || | || ||     |||||||| | || ||||||||||
Sbjct  131  TATGTTCATGGAGCC-T----CC-GACTGCGAC---ACCCTTGT-GATTACCCTGTTCCC  180

Query  120  ATGTTTATCATTTATAACGATCGGGAGTACGATGGATACACCCTCAAATTCGTGCTGCTC  179
            ||||||| | |||||| |||||||| |||||   ||||||||| ||  ||| ||||||||
Sbjct  181  ATGTTTACCTTTTATATCGATCGGGGGTACGGCCGATACACCCACAGCTTCATGCTGCTC  240

Query  180  TAGTCTCAAGAATATCCTCGATACGGAACCGGA-ATGTCTATGCGAAGGGTTGAAGAACA  238
             |||||||| ||||| ||||||||| ||||| | ||||||||||||||||||||||||  
Sbjct  241  CAGTCTCAAAAATATTCTCGATACGAAACCG-ATATGTCTATGCGAAGGGTTGAAGAAGG  299

Query  239  CTGCCTCTTACGGAATCAAACTTAACGTTACTAAGGCTACTACTCTTCCCGATGCTTGTA  298
            |  ||| ||| ||||||||||| |||||||||||  || |||||||||||| ||||||||
Sbjct  300  CA-CCT-TTA-GGAATCAAACTCAACGTTACTAAATCTGCTACTCTTCCCGTTGCTTGTA  356

Query  299  AAGTTTATGCTCCTCCGGTGGCAGCTTGTGGTGCATTGTCTCCTGCTAGTCCTCCTGCTA  358
            || || |||||||||||||| ||||||||| | ||||| ||||||||||||||||| || 
Sbjct  357  AACTTAATGCTCCTCCGGTGTCAGCTTGTGATTCATTGCCTCCTGCTAGTCCTCCTACTG  416

Query  359  CTAATGCGCAAG  370
            |||||| |||||
Sbjct  417  CTAATGGGCAAG  428



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19001209122


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5