BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898177
Length=444
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36060.2 | Symbols: MMZ3, UEV1C | MMS ZWEI homologue 3 | chr... 549 8e-156
AT3G52560.4 | Symbols: UEV1D-4 | ubiquitin E2 variant 1D-4 | ch... 422 2e-117
> AT2G36060.2 | Symbols: MMZ3, UEV1C | MMS ZWEI homologue 3 | chr2:15142677-15144182
REVERSE LENGTH=960
Length=960
Score = 549 bits (297), Expect = 8e-156
Identities = 396/444 (89%), Gaps = 5/444 (1%)
Strand=Plus/Plus
Query 1 ATGACTCTTGGCTCTGGAGGATCTAGTGTTGTTGTTCCGAGGAATTTCCGGTTGTTGGAG 60
|||||||||||||| |||||| |||||||| ||||||||||||||||||||| |||||
Sbjct 185 ATGACTCTTGGCTC---AGGATCGAGTGTTGTCGTTCCGAGGAATTTCCGGTTGCTGGAG 241
Query 61 GAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGAT 120
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 242 GAGCTTGAACGTGGAGAGAAAGGTATTGGAGATGGAACTGTGAGCTATGGAATGGATGAT 301
Query 121 GGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACGTAACT 180
||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 302 GGAGATGACATTTATATGCGCTCTTGGACTGGCACTATCATCGGTCCTCACAACGTAACT 361
Query 181 GTTCATGAAGGTAGAATTTATCAGTTGAAGCTCTTTTGTGACAAAGATTACCCAGAGAAA 240
|| ||||| ||| | |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 362 GTACATGAGGGTCGGATTTATCAGTTGAAGCTCTTCTGTGACAAAGATTACCCTGAGAAA 421
Query 241 CCTCCAACTGTCCGATTCCATTCACGTGTTAACATGGCTTGTGTCAACCACGAAACAGGA 300
||||| ||||| || |||||||| ||| | |||||| ||||||||||||| || || ||
Sbjct 422 CCTCCGACTGTTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGC 481
Query 301 GTGGTGGATCCTAAGAAATTCGGGGTACTTGCAAACTGGCAAAGAGAGTACACAATGGAG 360
||||||||| | ||||| || ||||| |||||||||||||||||| ||||||||||||||
Sbjct 482 GTGGTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGACAGTACACAATGGAG 541
Query 361 GATATACTGACACAGCTAAAGAAGGAAATGGCCACGTCGCATAACCGTAAGCTTGTTCAA 420
|| |||||||| || | |||||||| ||||| | ||||||||||| ||||||||||||
Sbjct 542 GACATACTGACTCAATTGAAGAAGGAGATGGCTGCATCGCATAACCGGAAGCTTGTTCAA 601
Query 421 CCTCCAGAAGGTACTTGT-TTCTA 443
||||| ||||| |||| | |||||
Sbjct 602 CCTCCCGAAGGAACTT-TCTTCTA 624
> AT3G52560.4 | Symbols: UEV1D-4 | ubiquitin E2 variant 1D-4 |
chr3:19494377-19496095 REVERSE LENGTH=937
Length=937
Score = 422 bits (228), Expect = 2e-117
Identities = 254/267 (95%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 178 ACTGTTCATGAAGGTAGAATTTATCAGTTGAAGCTCTTTTGTGACAAAGATTACCCAGAG 237
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 370 ACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGATTACCCGGAG 429
Query 238 AAACCTCCAACTGTCCGATTCCATTCACGTGTTAACATGGCTTGTGTCAACCACGAAACA 297
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 430 AAACCTCCAACTGTCCGATTCCATTCACGTGTCAACATGGCTTGTGTCAACCACGAAACA 489
Query 298 GGAGTGGTGGATCCTAAGAAATTCGGGGTACTTGCAAACTGGCAAAGAGAGTACACAATG 357
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 490 GGAGTGGTGGATCCTAAGAAATTTGGGCTACTTGCAAACTGGCAAAGAGAGTACACAATG 549
Query 358 GAGGATATACTGACACAGCTAAAGAAGGAAATGGCCACGTCGCATAACCGTAAGCTTGTT 417
|||||||||||| |||| | |||||||||||| | ||||||||||||||||||||||||
Sbjct 550 GAGGATATACTGGTACAGTTGAAGAAGGAAATGTCTACGTCGCATAACCGTAAGCTTGTT 609
Query 418 CAACCTCCAGAAGGTACTTGTTTCTAG 444
|||||||| ||||||||||| ||||||
Sbjct 610 CAACCTCCGGAAGGTACTTGCTTCTAG 636
Score = 305 bits (165), Expect = 2e-82
Identities = 171/174 (98%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 1 ATGACTCTTGGCTCTGGAGGATCTAGTGTTGTTGTTCCGAGGAATTTCCGGTTGTTGGAG 60
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 142 ATGACTCTTGGCTCAGGAGGATCTAGCGTTGTTGTTCCGAGGAATTTTCGGTTGTTGGAG 201
Query 61 GAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 GAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGAT 261
Query 121 GGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 GGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC 315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21112454580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5