BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg898182
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
AT3G52600.1 | Symbols: AtcwINV2, CWINV2 | cell wall invertase 2... 2798 0.0
> AT3G52600.1 | Symbols: AtcwINV2, CWINV2 | cell wall invertase
2 | chr3:19506891-19509359 REVERSE LENGTH=2048
Length=2048
Score = 2798 bits (1515), Expect = 0.0
Identities = 1691/1777 (95%), Gaps = 8/1777 (0%)
Strand=Plus/Plus
Query 1 ATGAGTGCTTCAAAGCTTGTTTCTGTATTACTATTGATTGTATTAATCAATATAAGCAAT 60
||||||||| ||||| ||| || |||||||||||||||||||||||||||||| ||||||
Sbjct 87 ATGAGTGCTCCAAAGTTTGGTTATGTATTACTATTGATTGTATTAATCAATATTAGCAAT 146
Query 61 AATGGCGTCGATGCATTTCACAAAATTTTCAAGAAATTGCAATCACAATCGACATCATTG 120
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 147 AATGGCGTCGATGCATTTCACAAAGTTTTCAAGAAATTGCAATCAAAATCGACATCATTG 206
Query 121 GATTCAGTGAGTCCTCTTCACAGAACCGCATATCACTTTCAACCTCCCCGCCATTGGATC 180
|| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 207 GAGTCAGTAAGTCCTCTTCACAGAACCGCTTATCACTTTCAACCTCCCCGCCATTGGATC 266
Query 181 AACGATCCGAATGCTCCAATGCTCTACAAGGGAATCTACCATCTCTTCTACCAATACAAT 240
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 267 AACGATCCGAATGCTCCAATGCTCTACAAGGGAGTTTACCATCTCTTCTACCAATACAAT 326
Query 241 CCCAAAGGTGCGGTTTGGGGTAACATTGTGTGGGCTCACTCGGTTTCTAAGGACTTGATC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 CCCAAAGGTGCGGTTTGGGGTAACATTGTGTGGGCTCACTCGGTTTCTAAGGACTTGATC 386
Query 301 AATTGGGAAGCCCTTGAACCAGCTATTTACCCATCCAAATGGTTCGACATCAACGGTACA 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 387 AATTGGGAAGCCCTTGAACCAGCCATTTACCCATCCAAATGGTTCGACATCAACGGTACA 446
Query 361 TGGTCCGGTTCATCTACCCACGTACCGGGCAAAGGACCGGTCATCCTCTACACCGGTATC 420
|||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 447 TGGTCCGGTTCAGCTACCCACGTACCGGGAAAAGGACCGGTTATCCTCTACACCGGTATC 506
Query 421 ACCGAGAACCAGACTCAAATTCAAAACTATGCAATTCCACAAGACCTTTCCGATCCATAC 480
||||||||||||||||| ||||||||||| || ||||||||||| |||||||| ||||||
Sbjct 507 ACCGAGAACCAGACTCAGATTCAAAACTACGCCATTCCACAAGATCTTTCCGACCCATAC 566
Query 481 CTCAAGACATGGATTAAA-CCAGACGATAACCCAATCGTAAAACCCGATCATGGCGAGAA 539
||||||||||||| |||| |||||||||||||| ||||||||||||||| ||||||||||
Sbjct 567 CTCAAGACATGGA-TAAAGCCAGACGATAACCCCATCGTAAAACCCGATAATGGCGAGAA 625
Query 540 CGGATCCGCTTTCCGTGACCCAACCACGGCTTGGTTCAACAAAAAAGATGGGTATTGGAG 599
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 626 CGGATCCGCTTTCCGTGACCCGACCACGGCTTGGTTCAACAAAAAAGATGGGTATTGGAG 685
Query 600 AATGCTTGTTGGCTCAAAGAAAAAGCACAGAGGAATCGCTTATATGTACAAAAGTCGTGA 659
|||||||||||||||||||| |||| |||||||||| |||||||||||||| || |||||
Sbjct 686 AATGCTTGTTGGCTCAAAGAGAAAGAACAGAGGAATTGCTTATATGTACAAGAGCCGTGA 745
Query 660 CTTCAAGAAATGGGTCAAAACCAAACGTCCTATCCACTCCAGAAAGAAGACCGGTATGTG 719
|||||| ||||||||||||| |||||||||||||||||| |||||||| |||||||||||
Sbjct 746 CTTCAAAAAATGGGTCAAAAGCAAACGTCCTATCCACTCAAGAAAGAAAACCGGTATGTG 805
Query 720 GGAATGTCCCGATTTCTTCCCGGTATCCGTAACCGACAAGAAAAACGGTTTGGACTTCAG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 GGAATGTCCCGATTTCTTCCCGGTATCCGTAACCGACAAGAAAAACGGTTTGGACTTCAG 865
Query 780 CTACGACGGTCCAAACGCCAAGCATGTGTTGAAGGTTAGTTTGGACTTGACCCGATACGA 839
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 866 CTACGACGGTCCAAACGCCAAGCATGTGTTGAAGGTTAGTTTGGACTTGACCAGATACGA 925
Query 840 GTACTATACTCTTGGAAAGTATGACACCAAGAAGGATCGATACAGACCAGACGGTAACAC 899
|||||| |||||||||| ||||||||||||||||||||| ||||| ||||||||| ||||
Sbjct 926 GTACTACACTCTTGGAACGTATGACACCAAGAAGGATCGTTACAGGCCAGACGGTTACAC 985
Query 900 TCCTGACGGTTGGGATGGTTTGAGATTTGATTATGGTAACTTCTATGCGTCAAAGACATT 959
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 986 TCCTGACGGTTGGGATGGTTTGAGATTTGATTATGGTAACTACTATGCGTCAAAGACATT 1045
Query 960 CTTTGATGACAAGAAGAAGAGAAGAATTCTTTGGGGTTGGGCCAATGAATCCGACACCGT 1019
|||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1046 CTTTGATGACAAGACGAACAGAAGAATTCTTTGGGGGTGGGCCAATGAATCCGACACCGT 1105
Query 1020 TGAAGATGATA-CGTTGAAGGGTTGGGCCGGAGTTCAGCTTATCCCACGAACAATCTTGC 1078
| ||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1106 TCAAGATGATACCG-TGAAGGGTTGGGCCGGAATTCAGCTTATCCCAAGAACAATCTTGC 1164
Query 1079 TTGACTATAGCGGTAAGCAACTCGTGTTTTGGCCTATTGAAGAGATTGAGTCATTGAGAG 1138
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 TTGACTCTAGCGGTAAGCAACTCGTGTTTTGGCCTATTGAAGAGATTGAGTCATTGAGAG 1224
Query 1139 GAAAGAATGTCCAAATGACCAACCAGAAAATGGAGATGGGCCAACGCTTTGAGGTCCAAG 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 GAAAGAATGTCCAAATGACCAACCAGAAAATGGAGATGGGCCAACGCTTTGAGGTCCAAG 1284
Query 1199 GAATCACTCCTGCTCAGGTGGATGTGGATGTGACATTCAACGTTGGAAGTCTAGAGAAAG 1258
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1285 GAATCACTCCTGCTCAGGTGGATGTGGATGTGACATTCAACGTTGGAAATCTAGAGAAGG 1344
Query 1259 CCGAAAAGTTCGACGCAAGCTTCACAACTAAACCACTAGAGTTATGTAACTTGAAAGGTT 1318
|||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1345 CCGAAAAGTTTGACGAAAGCTTCGCAACTAAACCACTAGAGTTATGTAACTTGAAAGGTT 1404
Query 1319 CAAATGTGACTGGCGGAGTCGGTCCTTTTGGTCTGATCACGTTGGCTACATCTGACCTAG 1378
| ||||||| ||| ||||| |||||||||||| ||||||||||||||||||||||| |||
Sbjct 1405 CGAATGTGAATGGTGGAGTTGGTCCTTTTGGTTTGATCACGTTGGCTACATCTGACTTAG 1464
Query 1379 AAGAATACACTCCTGTTTTCTTCAGAGTCTTCAAAGATGCCTCAACCAACAAGCCTAAGG 1438
|||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||
Sbjct 1465 AAGAATACACTCCTGTTTTCTTTAGAGTCTTCAAAGATGCCGCATCCAACAAGCCTAAGG 1524
Query 1439 TCCTCATGTGCTCTGACGCCAAGCCTTCGAGTCTCAAAACAGACACAGGCTCTGACGCAA 1498
| ||||||||||||||||||||||||||||||||||||| |||||| || ||||||| |
Sbjct 1525 TTCTCATGTGCTCTGACGCCAAGCCTTCGAGTCTCAAAAAAGACACCGGGACTGACGCCA 1584
Query 1499 AGCAGAGGATGTACAAACCCTCGTTTGCTGGTTTTGTTGATGTTGATCTCGCT-GACGGA 1557
|| |||||||||||||||| ||||||||||||||||| ||||| | |||| || ||||||
Sbjct 1585 AGGAGAGGATGTACAAACCATCGTTTGCTGGTTTTGTGGATGTCGGTCTC-CTTGACGGA 1643
Query 1558 AAGATCTCTCTAAGGAGTTTGATTGATCACTCGGTGGTGGAGAGCTTTGGTGCAAAAGGA 1617
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1644 AAGATCTCTCTAAGGAGTTTGATTGATCACTCGGTTGTGGAGAGCTTTGGAGCAAAAGGA 1703
Query 1618 AAGACAGTGATAACATCTAGAGTATATCCGACAAAAGCAGTAGGAGAAAAAGCTCATTTG 1677
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1704 AAGACAGTGATAACATCTAGAGTGTATCCGACAAAAGCAGTAGGAGAAAAAGCTCATTTG 1763
Query 1678 TTTGTCTTTAACAACGGATCACAGCCTGTGACCGTAGAGAGCCTCAATGCATGGAACATG 1737
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1764 TTTGTCTTTAACAACGGCTCACAACCTGTGACCGTAGAGAGCCTCAATGCATGGAACATG 1823
Query 1738 CAGAAGCCTCTGAAGATGAACCAAGGAGCTAAA-TGA 1773
|||||||||||||||||||||||||| || ||| |||
Sbjct 1824 CAGAAGCCTCTGAAGATGAACCAAGGTGC-AAAGTGA 1859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87700352115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5