BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg898191

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G54010.1 | Symbols: PAS1, DEI1 | FKBP-type peptidyl-prolyl c...   219    2e-56


> AT3G54010.1 | Symbols: PAS1, DEI1 | FKBP-type peptidyl-prolyl 
cis-trans isomerase family protein | chr3:20000861-20005183 
FORWARD LENGTH=2209
Length=2209

 Score =  219 bits (118),  Expect = 2e-56
 Identities = 234/286 (82%), Gaps = 23/286 (8%)
 Strand=Plus/Plus

Query  34   TATCACTGCAGTGTACAGACACTGGATGGTGAAGTAGTGGAAGCTTATGAGGTCAGAATG  93
            |||||||||| ||||| |||||||||||||| ||| |||||| | || ||||||||||| 
Sbjct  347  TATCACTGCACTGTACGGACACTGGATGGTGTAGTTGTGGAATC-TACGAGGTCAGAATC  405

Query  94   TGGAGGGAGAGATTTACCGATAAGACATGTCTTGAGAAAGAGCAAAATGATCCTTGGATT  153
            ||||||||||| | ||||||| ||| |||||||| |||| ||||||||||| ||||||||
Sbjct  406  TGGAGGGAGAGGTGTACCGATCAGAGATGTCTTGGGAAACAGCAAAATGATTCTTGGATT  465

Query  154  GCTCGAAGGAATTCCCACGAT---------T----T--CAA-G---A---TGAAACCTGA  191
            |||||||||||||||||||||         |    |  ||| |   |   ||||||||||
Sbjct  466  GCTCGAAGGAATTCCCACGATGCACAAGGGTGAAATTGCAATGTTCAAGATGAAACCTGA  525

Query  192  AATGCACTATGCAGAAAGTGATTGTCCAGTCTTTGCGCCAGGCAATTTTCCAAAAGATGA  251
            ||||||||||||||| | ||||||||||||||  || ||||  |||||||||||||||||
Sbjct  526  AATGCACTATGCAGAGATTGATTGTCCAGTCTCAGCTCCAGAAAATTTTCCAAAAGATGA  585

Query  252  TGAGTTTCGTTTTGAGATTGCTTTGATGGATTTCCCAAAAGCCAAG  297
            |||| ||| |||||||||||  ||| |||||||  | |||||||||
Sbjct  586  TGAGCTTCATTTTGAGATTGAGTTGTTGGATTTTTCTAAAGCCAAG  631



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15080324700


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5