BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg898237

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G53080.1 | Symbols:  | D-galactoside/L-rhamnose binding SUEL...   699    0.0  


> AT3G53080.1 | Symbols:  | D-galactoside/L-rhamnose binding SUEL 
lectin protein | chr3:19677993-19678741 FORWARD LENGTH=651
Length=651

 Score =  699 bits (378),  Expect = 0.0
 Identities = 439/469 (94%), Gaps = 2/469 (0%)
 Strand=Plus/Plus

Query  1    ATGGATACTTTACATTGTCGTCATAATCATGGCTTCATTTTGATTCTTCTTCTATTTCAT  60
            ||||| |||||||| ||||||||| | |||| |||||||||| ||||| | |||||||||
Sbjct  21   ATGGAAACTTTACAATGTCGTCATCAGCATGTCTTCATTTTGCTTCTTGTCCTATTTCAT  80

Query  61   TCATCTCTGTTTAGTTTAGCTTCAAAGATCGATGTTTCTGATGATGCACGAGGCATCAGA  120
            || ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  81   TCCTCTCTGTTTGGTTTAGCTTCAAAGATCGATGTTTCTGACGATGCACGAGGCATCAGA  140

Query  121  ATCGACGGTGACCAGAAACGTTTTCTCACTAATTCTCCTCAACATGGCAAGGAACATGTA  180
            |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct  141  ATCGACGGTGGCCAGAAACGTTTTCTAACTAATTCTCCTCAACATGGCAAGGAACATGCA  200

Query  181  GCGTGTACGAATGAAGAACCTGATCTCGGTCCTCTGACGCTTATTTCTTGCAACGAACCT  240
            ||||||||||| |||||||||||||||||||| ||||||| |||||||||||| ||||||
Sbjct  201  GCGTGTACGAACGAAGAACCTGATCTCGGTCCGCTGACGCGTATTTCTTGCAATGAACCT  260

Query  241  GGATATGTTATTACAAAGATCAATTTCGCTGATTATGGCAATCCCAGTGGTACATGTGGA  300
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  261  GGATATGTTATTACAAAGATCAATTTCGCTGATTATGGCAATCCCACTGGTACATGTGGA  320

Query  301  CACTTTAGACACGGCAATTGCGGTGCACGAGCTACCATGAGGATCGTCAAAAAGAATTGT  360
            ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  321  CACTTTAGACGTGGCAATTGCGGTGCACGAGCTACCATGAGGATCGTCAAAAAGAATTGT  380

Query  361  CTTAAAAAAGAAGA-GTGTTACCTTTTGGTTACGGATGAGATGTTTGGTCCGAGCCACTG  419
            |||  |||||| || |||| ||||||||||||||||||||||||||||||||||| | ||
Sbjct  381  CTTGGAAAAGA-GAAGTGTCACCTTTTGGTTACGGATGAGATGTTTGGTCCGAGCAAGTG  439

Query  420  CAAAGGAGCTCCTAGGCTCGCTGTTGAAACCACTTGTACACTAGCTTAG  468
            |||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct  440  CAAAGGAGCTCCTATGCTCGCTGTTGAAACCACTTGTACAATAGCTTAG  488



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5